Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_I02
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    28   2.1  
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    27   2.7  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.6  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   6.3  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   6.3  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   8.4  

>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -3

Query: 225 SYPDNDYRQPLSLRKIKTHHKLISVQINK*MYTINRNSXSAGNFYNKPNTFSDVQQ 58
           SYP   YR    L       + I +  NK   ++ R+S  + N  NK    S+  Q
Sbjct: 67  SYPKGSYRNSQRLTSRNGLDRFIPMTSNKDTISLGRHSSLSRNLVNKTKNASETYQ 122



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 482 KGTWPSTRSSKPNNIAHVPVVNMPVLNSSFGPILLRWAP 366
           KG     ++  P N+    +++ P L   F   LL W+P
Sbjct: 163 KGKLNEKKNRSPENLLPFRILDAPELRDDFYTSLLSWSP 201


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 382 RIGPKLLFNTGILTTGTCAILFGLLDRVEGHVPFITLS 495
           RI  + +   G  +TG  AI  G+   +    PF+TLS
Sbjct: 62  RIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLS 99


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 229 FCNAICVALQAPFYPKEAEKKGCTATEY 312
           FC  +C  L  PF+ K   K+G + T Y
Sbjct: 18  FC-CVCTILTMPFFKKPYRKRGISRTPY 44


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 548  EAVRKAAFPIASTILITKLSVIKGTWPSTRSSK 450
            +AVR + F I+    + KL ++ G+W   R SK
Sbjct: 933  QAVRSSDFSISQFCYLKKLLLVHGSWCYQRLSK 965


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/38 (26%), Positives = 25/38 (65%)
 Frame = -2

Query: 301  PCTLSSQPLSDKKELAARHKLRYKNQLSR*RLSSAIVA 188
            P T++++PL+D+K +   + ++ K  ++R  + S ++A
Sbjct: 1543 PSTITAKPLNDEKAINNENSVKQKTVITRKDVVSKVLA 1580


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 363 DGAHNEHH*LEDPEHQSIFCGRAPFLLSLFRIK 265
           DG HNEH  L +   Q +FC     +L + +++
Sbjct: 301 DG-HNEHRELRNARGQRLFCSEYGTILEIIQVE 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,823
Number of Sequences: 5004
Number of extensions: 53031
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)