Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_H17
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.18 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.0  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   9.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.0  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 20/49 (40%), Positives = 22/49 (44%)
 Frame = -1

Query: 940 WGGGXGXFXXGGGXGXMRXAGWXXPXGGGGGAXXGXPRGGXPPGXGXGP 794
           +GGG G F  G G       G+    GG GG   G   GG P G G GP
Sbjct: 226 FGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGF--GGGPGGHG-GP 271



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 22/58 (37%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
 Frame = -1

Query: 937 GGGXGXFXXG--------GGXGXMRXAGWXXPXGGGGGAXXGXPRG--GXPPGXGXGP 794
           GGG G F  G        GG G     G      GG G   G P G  G P G G GP
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 22/57 (38%), Positives = 23/57 (40%)
 Frame = -1

Query: 940 WGGGXGXFXXGGGXGXMRXAGWXXPXGGGGGAXXGXPRGGXPPGXGXGPXXAXAXXE 770
           +GGG G    GGG G  R        GG GGA  G  RGG   G G     A    E
Sbjct: 28  FGGGRGG-ARGGGRGGARGG-----RGGRGGARGG--RGGSSGGRGGAKGGAKVIIE 76


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
 Frame = -1

Query: 934 GGXGXFXXG-----GGXGXMRXAGWXXPXGGG-GGAXXGXPRGGXPPGXGXG 797
           GG G F  G     GG G     G+     GG GG   G  RGG   G   G
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 877 TPXPSXIPXXPPXXKXLXPPPXXXKP 954
           TP P+ IP  PP      PPP    P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 367 PPPXXGGXXPPXPTKNXXXXPPPP 438
           P P  GG  PP P        PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPP 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,590
Number of Sequences: 5004
Number of extensions: 18722
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)