Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_H16
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.6  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   4.8  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   6.3  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    26   8.3  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 510 ITVRECGIDKRLCSSYGSFRIIGINQNS 427
           I+V +  +D+++C+SY S   I + QN+
Sbjct: 341 ISVSQISVDEKICTSYESLPKIQLEQNT 368


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 890 TFHCSGLVILPTNFFQRTS 834
           +F CS L++LPT F  R S
Sbjct: 181 SFACSALIVLPTKFLARFS 199


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 249 KGFIFKPHR*IHEQNISEMVQRAGPVD-GKRSLIGRLHGRISNEMGDRES 395
           KGF+FK +  +  +  S +   A  ++  K +++  L+    NE G +++
Sbjct: 227 KGFLFKKNNAMQNRTTSNIKSNASAIEKNKETILNALNNSTLNENGHQDT 276


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
 Frame = +1

Query: 589 YKRKVVEXIEEMLAK-YKLXDAYEELDXIIDL------QH-SKKCEREGFCDLVHDK 735
           Y+      I+++ ++ Y     Y EL  + D       QH + +C+R G C+ +H K
Sbjct: 113 YEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAK 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,307
Number of Sequences: 5004
Number of extensions: 69145
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)