Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_H11
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    43   7e-05
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    29   0.66 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   1.5  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    28   2.0  

>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
 Frame = +2

Query: 356 LALYVFATFWGLYLIDEDLILPAHIQEVLPNWINHGMHTTIVPFIILELLLTNRNYPTRK 535
           L   V   +W +   D  L++P      LP   +  +H     + +++ L  +  + +  
Sbjct: 29  LETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLIDYLFFSPPF-SLS 87

Query: 536 VG--LSVTLLINFTYVFWIHYLYFTQGTWVYPFLDLMNWPTRILFCCTSSIIGVLFYILG 709
           +G  L V L I  +Y+ W+   Y     + YP L +++   + +F   +SII    YI+ 
Sbjct: 88  IGPSLLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTIFYTVASIISFSCYIVL 147

Query: 710 ENIHYIVTP 736
           + +H    P
Sbjct: 148 KMVHPYALP 156


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
 Frame = +1

Query: 139 DQQYVEIPLPDGIKNMSFKARGIFLTFWCFALQTIYFGTAVLNDIIGTNATAPKN----- 303
           + +Y +  +    +  SF+ R + L      + T+Y   + L + + T  ++  N     
Sbjct: 536 ENEYFQSQITSLYQESSFQKRLLMLQLTVLIVLTVYMAVSRLPENLPTTRSSSNNPIEAS 595

Query: 304 -PPLIRRVKDIVFXFGVHSSFICVCHILGPVL---DRRGPNSA--GPHPRGSTKLDKSRD 465
            PP  R  +DI        S     + +GP L    +R PN++    H R   K+  SR 
Sbjct: 596 RPPFSRDEQDISKANDFRVSASSAVYTVGPELLQRKKRDPNTSIRSIHEREQDKIIHSR- 654

Query: 466 AHNYC 480
           +H+ C
Sbjct: 655 SHSVC 659


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 428 IQEVLPNWINHGMHTTIVPFII 493
           I +++P W   G +TTI+P +I
Sbjct: 268 IMQMIPGWSTTGTYTTIIPLLI 289


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 388 PVLDRRGPNSAGPHPRGSTKLDKSRDAHNYCTFHHFGASLD 510
           P L  R  +S+   P  ST   KSR A +  T H  G S D
Sbjct: 133 PSLPPRTKSSSQSSPMASTSTSKSRYADSLSTLHDMGFSDD 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,917
Number of Sequences: 5004
Number of extensions: 74279
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)