Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_H09
(971 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.061
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.19
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.19
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.43
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 29 0.75
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.3
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 7.0
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.061
Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Frame = +3
Query: 675 PPPXXPPPXXXXAXXXXXFPPXX---PPPPPXXGXXXXXRXPPXRXGGRA 815
PPP PPP A PP PPPPP R PP RA
Sbjct: 337 PPP--PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = +3
Query: 666 PPXPPPXXPPPXXXXAXXXXXFPPXXP-PPPPXXGXXXXXRXPPXRXGGRAAP 821
PP PP PP A PP P PP G PP AP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.19
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +3
Query: 654 ALFXPPXPPPXXPPPXXXXAXXXXXFPPXXPPPPPXXG 767
A P PPP PPP PP PPPPP G
Sbjct: 2 ASLPPGNPPPPPPPPGFE--------PPSQPPPPPPPG 31
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.19
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 666 PPXPPPXXPPPXXXXAXXXXXFPPXXPPPPP 758
PP P PPP PP PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Frame = +3
Query: 666 PPXPPPXX----PPPXXXXAXXXXXFPPXXPPPPPXXGXXXXXRXPP 794
PP PPP P P PPPPP G PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 970 GXXPPPPGXXTAAXGPXXXPP 908
G PPPP A GP PP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP 780
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.43
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 666 PPXPPPXXPPPXXXXAXXXXXFPPXXPPPP 755
PP PP PPP A PP PPPP
Sbjct: 1707 PPPPPMSVPPPPS--APPMPAGPPSAPPPP 1734
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 29.5 bits (63), Expect = 0.75
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 669 PXPPPXXPPPXXXXAXXXXXFPPXXPPPPPXXG 767
P P P P A FPP P PPP G
Sbjct: 180 PLPSGNVPSPAEFQAMMASGFPPFMPIPPPIGG 212
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 666 PPXPPPXXPPPXXXXAXXXXXFPPXXPPPP 755
PP PPP PP + PP PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 735 PXXPPPPPXXGXXXXXRXPPXRXGGRAA 818
P PPPPP PP G R+A
Sbjct: 3 PAPPPPPPAPAPAAAAPAPPLMTGDRSA 30
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -2
Query: 757 GGGGGXXGGXKXXXXAXXXXGGGXXGGGXGGXK 659
GG G GG GG GGG GG +
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGAR 44
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 9.2
Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Frame = -2
Query: 826 PXGAARPPXRXGGX---RXXXXXPXXGGGGGXXGGXKXXXXAXXXXGGGXXGGGXGGXK 659
P GA P GG R G GG GG + GGG GG GG +
Sbjct: 127 PKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGF--GGGSRGGFGGGSRGGSRGGFR 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,529
Number of Sequences: 5004
Number of extensions: 17423
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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