Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_H08
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   4.8  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   6.4  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    26   8.5  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   8.5  

>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 168 HSTR*QTFFLIHKTC 124
           H T  QTFFL+HK C
Sbjct: 318 HCTEEQTFFLMHKIC 332


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +3

Query: 219 SPPXTPALMENKVELXLKKIAAKRARESSSPPXGLVTPQPSDSEGEDEXRK 371
           SP    A++  K  L  KK   K+  ESSS      T Q   S  E+E  K
Sbjct: 287 SPVEETAILNRKPTLRKKKSIPKKQNESSSTIQKENTVQQEASSSEEEAVK 337


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +3

Query: 165 NVPILTRMSTLLEVCGPLSPPXTPALME-NKVELXLKKIAAKRARESSSPPXGLVTPQPS 341
           + P+L   S+LL+   PL+   +   ME       LKK   +R   SS       TPQ S
Sbjct: 540 HTPVLKHTSSLLDHHSPLATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRS 599

Query: 342 DSEGEDEXRKRSR 380
               +   RK S+
Sbjct: 600 KEVKKVPARKLSQ 612


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 282 AKRARESSSPPXGLVTPQPSDSEGEDEXRKRSRC 383
           ++++   S PP  L  P+P D +G  E     RC
Sbjct: 464 SQKSPSPSLPPNELNEPEPDDMDGYKEAFNELRC 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,714
Number of Sequences: 5004
Number of extensions: 26765
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)