Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_H06
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    29   0.89 
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    28   2.1  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    27   3.6  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.6  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    27   4.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   4.8  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   6.3  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   6.3  

>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 312 LASSISVFRTFKSTSPLRQFPKVRNAASTSRDFVFSI 202
           L  S  VFR F+S++P   FP V  A   SR F  S+
Sbjct: 9   LQLSWQVFRRFQSSNPQLSFPCVDQAQERSRQFEQSL 45


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = +2

Query: 266 GLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHIND 445
           GL  +N+L + ++ +K    LD+V     D + +L  C++S+L+  +   G+E    +  
Sbjct: 85  GLKIVNILSS-LDSSKWEAYLDQVVN--ADSADELTVCLTSILKKAKIIPGSEARVFVGY 141

Query: 446 AQNSTNQLI 472
              ST++++
Sbjct: 142 DSRSTSEIL 150


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 155 SSANTAGSENRYQDSLPHHCNQGNL 81
           S +NT+  +NRY D +P++C + +L
Sbjct: 290 SLSNTSYKKNRYTDIVPYNCTRVHL 314


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 581 LKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSSKSVPHRH 703
           +  +  T+ S  N S+ EK  K+D + S +    K + H H
Sbjct: 41  INSTLTTLISQENASMDEKIEKIDSLLSRVSTVKKKMKHLH 81


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = -2

Query: 657 ISSTFAHFSTRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 493
           +  +   F++RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 280 VGGSILEFNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
 Frame = +2

Query: 167 LQRL*PRNAPRTMLKT--KSLEVEAALRTFGNCLKGLVDLNVLKTEIEEAKP-NGALDEV 337
           L+ L  +N+ + + +T  +  EV   L T    +K   DLN +    EE +     +D +
Sbjct: 482 LRLLASKNSDKALAETNIRLQEVTKELETLR--MKNSNDLNEIHDLREENEGLTLKIDSI 539

Query: 338 FKKYCDKSAQLKGCISSVLQGVRPCVG--NEYANHINDAQNSTNQLIDFVCYKDGD 499
            K+      +L+  I S    V    G  +EY N + D + + N++++   YKD D
Sbjct: 540 TKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 92  DYNDVEDCLDNDFRCRLCWLMTLVRLQRL 178
           DY+DV  C      C  CW    + +Q L
Sbjct: 136 DYDDVRTCCSKTNICEKCWPFITIAVQVL 164


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 632 QQGSSYWRIPQWGSSVSNLKSMS*DSQSFAGSTQGRLP 519
           Q+ SS  R+  + S++S+LKS    SQ+  GST   +P
Sbjct: 376 QRLSSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,415,145
Number of Sequences: 5004
Number of extensions: 68516
Number of successful extensions: 203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)