Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_H05
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   251   9e-68
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    30   0.51 
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   8.3  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.3  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  251 bits (615), Expect = 9e-68
 Identities = 120/218 (55%), Positives = 155/218 (71%), Gaps = 1/218 (0%)
 Frame = +1

Query: 238 DGVIAPGYSPEALKLLSKKKGGNYCVLKIDPTYEPSLMEQKTIFGLTLEQKRNDAKITAE 417
           DGVIAPGY PEAL+LL KKKGG YCVL++DP Y P+ +E + ++G++L+Q RN AKI   
Sbjct: 331 DGVIAPGYEPEALELLKKKKGGKYCVLQMDPKYVPAEIETRQVYGISLQQHRNHAKIDFS 390

Query: 418 LFKNVVTTKKDLPSNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRIHCTRLA 597
           LF+ VV+  KDLP +A+ DL++AT ALKYTQSNSVC+A++G V+G+GAGQQSRIHC RLA
Sbjct: 391 LFEKVVSKNKDLPKSALIDLVIATTALKYTQSNSVCYAKNGMVVGLGAGQQSRIHCNRLA 450

Query: 598 GGKAALWWLRRHPSVLAMRFRQGVTRAVQANAIDNYVNGTVGSD-LPLEQWDTLFEGKPP 774
           G KA  WWLR HP VL M+F++   R  ++NAID YV   V ++    EQW++ FE  P 
Sbjct: 451 GDKADNWWLRHHPKVLGMQFKKSAKRPEKSNAIDLYVLDAVPAEGSEREQWESAFETIPE 510

Query: 775 ALLTDSQREEWIKKMDKVALASDAFFPFRDTSTELCSA 888
             LT  +REE++     V  ASDAFFPF D    L  +
Sbjct: 511 P-LTKKEREEFLATCKDVVCASDAFFPFPDNIYRLAQS 547



 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 30/61 (49%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 51  AVGLPLTDEEAAVCMVAG--ELSXXXXXXXXXXXXXXMSSFGDFVALSDPCDVSTATIIS 224
           AVGLPL+D E  V  V+   E +              MSSFGDF+ALSD  DV TA IIS
Sbjct: 267 AVGLPLSDVEKKVYFVSDITEFTPLACAYARARGADRMSSFGDFIALSDTVDVCTARIIS 326

Query: 225 R 227
           R
Sbjct: 327 R 327


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 358 KTIFGLTLEQKRNDAKITAELFKNVVTTKKDLPSNAVRDLIVATIALKYTQSNS 519
           KT   LT ++   D +I  +L  N +  +  LPS  +RD IV     K + SNS
Sbjct: 32  KTGSALTSDKSLFDKRIVKQLKNNELFNRLTLPSQELRDGIVRENQTKPSNSNS 85


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 887 ALHSSVDVSLNGKKASEARATLSIF--LIHSSRWESVNRAGGLPSNNVS 747
           +LH+S+D   N  + S A+A +S+F  +I  ++ E V     L S +++
Sbjct: 205 SLHTSIDEIQNPVRKSVAKAWVSVFEKIIEKAKLEGVQGLEDLNSTSLA 253


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +1

Query: 619 WLRRHPSVLAMRFRQG-VTRA-VQANAIDNYVNGT--VGSDLPLEQWDTLFEGKPPALLT 786
           W R   ++L   F    VT A  Q++ I N+ N      +DLP    D     +P A  +
Sbjct: 96  WARDF-NILTSNFASSSVTSAPTQSSHISNFTNSQKYFANDLPNSLTD-----QPLAQPS 149

Query: 787 DSQREEWIKKMDKVALASDAFFPFRDTSTE 876
            SQR  W+     V+ +S +  PF D+  E
Sbjct: 150 ASQRSTWLPCSAAVSTSSPSSDPFFDSYLE 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,899
Number of Sequences: 5004
Number of extensions: 54130
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)