Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_H05
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 49 4e-06
04_01_0182 - 2058396-2058456,2058623-2058660,2058748-2058850,205... 30 2.9
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609... 29 6.6
11_06_0366 + 22744584-22744835,22745248-22745335,22745657-227457... 28 8.7
11_06_0363 + 22724802-22725053,22725466-22725553,22725875-227259... 28 8.7
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819 28 8.7
01_06_1045 - 34086936-34087029,34087093-34087406 28 8.7
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 49.2 bits (112), Expect = 4e-06
Identities = 31/122 (25%), Positives = 67/122 (54%)
Frame = +1
Query: 244 VIAPGYSPEALKLLSKKKGGNYCVLKIDPTYEPSLMEQKTIFGLTLEQKRNDAKITAELF 423
V+APGY+ + L++L K K +L+ + + ++ + + G L Q+ +D +T E
Sbjct: 395 VVAPGYTEKGLEIL-KGKSKTLRILEAKRSGK-GMLSLRQVSGGWLAQESDD--LTPEDI 450
Query: 424 KNVVTTKKDLPSNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRIHCTRLAGG 603
+++ + + D A + +K+ +SN++ A++ ++G+G+GQ +R+ R+A
Sbjct: 451 TFTTVSERAPQDSELSDAKFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRLESLRIAFR 510
Query: 604 KA 609
KA
Sbjct: 511 KA 512
>04_01_0182 -
2058396-2058456,2058623-2058660,2058748-2058850,
2059485-2059567,2059651-2059944,2060440-2060572,
2060660-2060735,2060867-2060997,2061112-2061214,
2061305-2061578,2061661-2061732
Length = 455
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +1
Query: 400 AKITAELFKNVVTTKKDLPSNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRI 579
A T++ K V+ + DL + V+ ++ AL + +D V+GI G +
Sbjct: 133 ASKTSDTPKRVIALR-DLANCEVKLVLWGEHALDFDADAVHSVGQDNVVVGIFVGTLMKA 191
Query: 580 HCTRLAGGKAALWWL 624
+ L+GG A W+L
Sbjct: 192 YNKTLSGGSACKWYL 206
>01_05_0106 + 18160018-18160243,18160423-18160470,18160816-18160974,
18162056-18162219,18162778-18162885,18163695-18163865,
18163945-18164478,18164574-18164648,18164724-18164852,
18164975-18165049,18165129-18165338,18165529-18165681,
18165763-18165986,18166305-18166422,18166518-18166656,
18166745-18166946,18166981-18167149,18167190-18167267,
18167268-18167408,18167717-18167819,18169024-18169324,
18169450-18169518,18169602-18169626,18170946-18170975
Length = 1216
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 370 GLTLEQKRNDAKITAELFKNVVTTKKDLPSNAVRDLIVATI 492
G +E++R A + E + V T DLP+ +VRDL++ +I
Sbjct: 1052 GNDIERRREIANVFCEALRAVDAT--DLPATSVRDLLLPSI 1090
>11_06_0366 +
22744584-22744835,22745248-22745335,22745657-22745702,
22746159-22746345,22746436-22746507,22746597-22746728
Length = 258
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +1
Query: 394 NDAKITAELFKNVVTTKKDLPSNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQS 573
N A++ + F N T+KD + R ++ A K+ +S G++ ++
Sbjct: 113 NAAEVISSAFPNWCITRKDAAESKERSEALSAAAKKFKLPSSENL---GEIAEHCNERKC 169
Query: 574 RIHCTRLAGGKAALWWLRRHPSVL 645
HC AG K +W L + +L
Sbjct: 170 AGHCAEEAGQKLYMWTLIKRKELL 193
>11_06_0363 +
22724802-22725053,22725466-22725553,22725875-22725920,
22726377-22726563,22726654-22726725,22726815-22726946
Length = 258
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +1
Query: 394 NDAKITAELFKNVVTTKKDLPSNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQS 573
N A++ + F N T+KD + R ++ A K+ +S G++ ++
Sbjct: 113 NAAEVISSAFPNWCITRKDAAESKERSEALSAAAKKFKLPSSENL---GEIAEHCNERKC 169
Query: 574 RIHCTRLAGGKAALWWLRRHPSVL 645
HC AG K +W L + +L
Sbjct: 170 AGHCAEEAGQKLYMWTLIKRKELL 193
>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
Length = 451
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +1
Query: 616 WWLRRHPSVL-AMRFRQG--VTRAVQANAIDN 702
WW R HPS L +++ + RAV ANA DN
Sbjct: 351 WWKREHPSELFTVKYIDPTYMIRAVPANATDN 382
>01_06_1045 - 34086936-34087029,34087093-34087406
Length = 135
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 605 LPPASRVQWMRDCCPAPMPITCPSRAKQTELL*VYFRAMVATMRS 471
+PP + + R CCP P+P CPS A + VY + T R+
Sbjct: 1 MPP---IPYGRRCCPPPLP--CPSPATAAVAVLVYKGQLQGTNRA 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,233,144
Number of Sequences: 37544
Number of extensions: 434199
Number of successful extensions: 1237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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