Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_H05
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +1

Query: 457 SNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRIHCTRLAGGKAALWWLR 627
           SN +   I   + LK   ++S  FA   +++ +  G  + +HC         + WL+
Sbjct: 789 SNGIGSGIGKVVQLKV--NSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLK 843


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +1

Query: 457 SNAVRDLIVATIALKYTQSNSVCFARDGQVIGIGAGQQSRIHCTRLAGGKAALWWLR 627
           SN +   I   + LK   ++S  FA   +++ +  G  + +HC         + WL+
Sbjct: 785 SNGIGSGIGKVVQLKV--NSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWLK 839


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 647 ASTLGCRRSHHSAALPPASRV 585
           +ST G  R H  A  PP+ R+
Sbjct: 393 SSTPGTGREHDPAKFPPSFRI 413


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 856 TGRKRRKRGPLYPSS*SIPR 797
           +GR+RR+R P Y S   I R
Sbjct: 406 SGRRRRRRTPRYNSVSKIDR 425


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 492 NGRHDEVPHGVRWQILLGGHDVLEK 418
           NGR D++P  +  + LL   +++E+
Sbjct: 28  NGREDQIPREMNTERLLPYVEIIEQ 52


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 492 NGRHDEVPHGVRWQILLGGHDVLEK 418
           NGR D++P  +  + LL   +++E+
Sbjct: 28  NGREDQIPREMNTERLLPYVEIIEQ 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,364
Number of Sequences: 438
Number of extensions: 3712
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)