Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_H03
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    29   0.91 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   6.4  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   8.5  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   8.5  

>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 322 LASSISVFRTFKSTSPLRQFPKVRNAASTSRDFVFSI 212
           L  S  VFR F+S++P   FP V  A   SR F  S+
Sbjct: 9   LQLSWQVFRRFQSSNPQLSFPCVDQAQERSRQFEQSL 45


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 22/104 (21%), Positives = 42/104 (40%)
 Frame = +2

Query: 443 TTSMMPKTVPINSSTLCATRTETGLLCSSRKAALSASXQKTENLKTCFLNLKQSFPTVES 622
           TTS    + P +SST   T   +    SS  ++ S+S   + +  +   +   S  +  S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194

Query: 623 ANNLSLVEKCAKVDEMTSCIVXSLEECSXTGHPANMAGIPESRS 754
           +++ S     +    +TS    S    S +   ++ +  P S S
Sbjct: 195 SSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSS 238


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 163  SSSQHTRQRXIVIKTVVPHHCXQWKLVLTSKGWTRNW 53
            SS Q   Q       VV   C  W L+ T+KGW   W
Sbjct: 1362 SSDQLPLQCGSATSVVVSEGC-NWALIGTTKGWLLLW 1397


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 430 NEYANHINDAQNSTNQLIDFVCYKDGD 510
           +EY N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,007
Number of Sequences: 5004
Number of extensions: 62562
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)