Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_H03
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   4.6  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      29   4.6  
AL117193-17|CAJ76959.1|  242|Caenorhabditis elegans Hypothetical...    29   4.6  

>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = +2

Query: 395 ARCCRACVLV*ATNMRTTSMMPKTVPINSSTLCATRTETGLLCSSRKAALSASXQKTENL 574
           A C   C++  +TN+RT S  P   P      C       LLC S   A S +      L
Sbjct: 544 AMCKIWCLISGSTNIRTVSNFPDGAPCGPGQYCIKGECRPLLCGSTTLAYSEADCPLSVL 603

Query: 575 KT 580
           +T
Sbjct: 604 QT 605


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 445 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 540
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 445 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 540
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 445 HINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 540
           ++ DA N T +LID    K+GD +A+ +A  G
Sbjct: 66  NVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97


>AL117193-17|CAJ76959.1|  242|Caenorhabditis elegans Hypothetical
           protein Y105C5A.8a protein.
          Length = 242

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +2

Query: 545 SASXQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAK--VDEMTSCIVXSLEECSXTGH 718
           S+  Q  +  +TC+ +  Q F   +  N+L       K  VD++ +C    ++ C+  G 
Sbjct: 61  SSKLQALDCFETCWKSEIQRFKLTDDPNSLKACFDAKKPFVDQVINCFQTKVKACTENGE 120

Query: 719 P 721
           P
Sbjct: 121 P 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,782,609
Number of Sequences: 27780
Number of extensions: 374152
Number of successful extensions: 940
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)