Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_H03
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   8.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = -3

Query: 255  YAMLLQLPGTLSSALFLVHCEVTTAVI*SKSHQANTPGSXKSLSRQSFHIIVINGNLF*L 76
            Y + +Q+P   S+ +  V    +++++    H  +      SL+  + H    +GNL  L
Sbjct: 1397 YTLTVQVPP--SAPVLYVTSSTSSSIL---LHWKSGHNGGASLTGYTLHYRTAHGNLDEL 1451

Query: 75   RKVGHATGQNLK 40
            +   HAT   LK
Sbjct: 1452 QLSRHATSHELK 1463


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = -3

Query: 255  YAMLLQLPGTLSSALFLVHCEVTTAVI*SKSHQANTPGSXKSLSRQSFHIIVINGNLF*L 76
            Y + +Q+P   S+ +  V    +++++    H  +      SL+  + H    +GNL  L
Sbjct: 1393 YTLTVQVPP--SAPVLYVTSSTSSSIL---LHWKSGHNGGASLTGYTLHYRTAHGNLDEL 1447

Query: 75   RKVGHATGQNLK 40
            +   HAT   LK
Sbjct: 1448 QLSRHATSHELK 1459


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 479 SSTLCATRTETGL----LCSSRKAALSASXQKTENLKTCFLNLKQSFPTVESANNLSLVE 646
           SST    R ++G     + + R  A     Q+T++L   F  L++  PT+ S + LS ++
Sbjct: 234 SSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSLNEAFAALRKIIPTLPS-DKLSKIQ 292


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 569 SQSFXWKHSGPPSAMNKAIRSPSL 498
           S  F  K  GPP+  N  I SPS+
Sbjct: 346 SFDFQSKDQGPPNDGNGNILSPSI 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,646
Number of Sequences: 438
Number of extensions: 4168
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)