Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_G23
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ...    32   0.63 
AL023837-3|CAB63348.2|  283|Caenorhabditis elegans Hypothetical ...    31   1.1  
AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical...    29   5.8  

>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
           protein 1, isoform a protein.
          Length = 1147

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 810 CLSTVXLFH*KKQVISKTYFVNNIDIFLKQSKITFYTSNCKIYREANSSFFGERQ 646
           CL+T   +      I+ T  V+NI+     S   FYT+  +++ E  SSF G  Q
Sbjct: 380 CLATNLRYEIPTAYINGTSIVHNINSMGIPSNTNFYTNPIRVHLEVKSSFTGSIQ 434


>AL023837-3|CAB63348.2|  283|Caenorhabditis elegans Hypothetical
           protein Y37H2C.4 protein.
          Length = 283

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = -3

Query: 744 NIDIFLKQSKITFYTSNCKIYREANSSFFGERQTNIIL*MMGLC*QSPLMPDLCLKTNVW 565
           ++DIF++ S  TF +S C + ++ N S FG   T ++L +   C  S +    C     +
Sbjct: 13  SLDIFVEPSVRTFQSS-CYLVQDLNKSRFGHDITLVLLTVYSSCYGSSMSVFACHFIYRY 71

Query: 564 SSVT-KFLRDHTAG*DVGVLIKIP 496
            +V   F++ + +G   G L   P
Sbjct: 72  GAVNINFMQKYISGVKQGFLYLAP 95


>AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical
           protein Y38E10A.10 protein.
          Length = 237

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 177 IRGLF-SKRHPRDVTWDTRMGGGKVFGTLGQNDD 275
           + GL+ + R  +D+  +T   G KVF   G+NDD
Sbjct: 155 VNGLWCASRFIKDINEETHYEGSKVFSIYGRNDD 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,797,271
Number of Sequences: 27780
Number of extensions: 482410
Number of successful extensions: 1209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)