Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_G20
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    26   0.54 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   2.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   2.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   2.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   2.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   8.7  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 732 VLXREKGTGKLYAMKILK 785
           +L   KGT +LYA+KILK
Sbjct: 1   MLAERKGTDELYAIKILK 18


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 100 NHLMRKNLVFPCKKTINV 47
           N+LMR++L+  C+  +N+
Sbjct: 175 NYLMRRHLILSCQGRLNI 192


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 100 NHLMRKNLVFPCKKTINV 47
           N+LMR++L+  C+  +N+
Sbjct: 175 NYLMRRHLILSCQGRLNI 192


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 100 NHLMRKNLVFPCKKTINV 47
           N+LMR++L+  C+  +N+
Sbjct: 226 NYLMRRHLILSCQGRLNI 243


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 100 NHLMRKNLVFPCKKTINV 47
           N+LMR++L+  C+  +N+
Sbjct: 175 NYLMRRHLILSCQGRLNI 192


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +2

Query: 596  PVQHRCPMLTIATWHSSAPASVTPPHHLRKIRIREGARQGYVW 724
            P + + PM+ +      AP      H L +I+ R     G VW
Sbjct: 961  PSEPKAPMILVGPGTGIAPFRGFWHHRLAEIKRRPDLEYGKVW 1003


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 402 PSQQVHRTRLPD 437
           P Q+VH +R+PD
Sbjct: 55  PCQRVHSSRIPD 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,393
Number of Sequences: 438
Number of extensions: 5496
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)