Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_G16
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    27   2.6  
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    27   3.5  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    26   8.1  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    26   8.1  

>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 479 VPSPPTAKLYPISSQPLVTWCTLCILR-KSLSQSART 372
           +PS P AK YP    P  +    C+ R +S+  SA T
Sbjct: 113 IPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHT 149


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 511 GAHAFGVNTRSIGILLIGDFITNQPPQAQLQSVKDLIEAGVRL 639
           G H+FG++  +  ++ + ++   +P   +LQS+K  IE+   L
Sbjct: 471 GQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLL 513


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = -2

Query: 657 IGSDVTEPHTSLDQVXXXXXXXXXXLISNKISNQQDSDASGVDAERVSTN*TPATALEHS 478
           I S + E HT +D++            S + S  Q   ASG++ ER+ T  T A +L +S
Sbjct: 565 ISSQLRELHTKIDELRETVSNFRADYNSIRTSLNQLEAASGIN-ERIQT--TSADSLLNS 621

Query: 477 SFTADCETISNIFPAIS 427
           +  +  E   N   +I+
Sbjct: 622 NGMSGTEGFENTQTSIT 638


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 217 LPSPIKLVSDYSFPFVSREEWGARPPTMTSPLKVSPVPIVV 339
           LP  ++L  D +      +    R P + SPLK SPV + V
Sbjct: 522 LPKILELSKDITVNAHPNQPSRPRLPRVASPLKTSPVKLAV 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,972
Number of Sequences: 5004
Number of extensions: 68071
Number of successful extensions: 192
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)