Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_G08
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    32   0.10 
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    30   0.42 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    30   0.42 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   0.97 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.9  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   6.8  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   9.0  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   9.0  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 298  ISKRTFLKLWQKHVANVLQPRNIYSNVSLKSSRTSYLKNTKP-SKLNTIPKGKHFDALLS 474
            +   T+   + K+   +LQ   I  +     +   Y+K++ P SK NT   GK FD  L 
Sbjct: 2595 VKNDTYGVTYVKYATILLQELTIEIDEDFAFAALEYIKDSVPRSKRNT---GKMFDDSLE 2651

Query: 475  AVANS*GNQFLIFPAVLNL 531
             V  + GN   ++  VLNL
Sbjct: 2652 LVPENLGNDLKVYFEVLNL 2670


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 325 TASGMSFLKSPETASQGDVSKKHPIKAFRESI 230
           ++ G+ FL SPE A+Q  +S+KH   A  +S+
Sbjct: 112 SSRGVHFLDSPELANQCGLSRKHIFDAVEDSV 143


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +3

Query: 285 AVSGDFKKDIPEAVAEACGKCTPAQKHLFKRFLEVVKDKLPQEYEAFKTKYDP 443
           A S  FK DI E + ++      A  HL+ R  E ++ KLP+E E F  K++P
Sbjct: 106 AYSVVFKDDISEEMLKS------ALNHLYDRMTEALRFKLPEEDEVF-DKHEP 151


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 156 FAAVYCKETYSSENDDLDIEALVGNID-SLKAFIGCFLETSPCDAVSGDFKKDIPEAVAE 332
           F   + +  Y ++ND       + +ID S+K+F  C  E +   +  GD  +D   A  +
Sbjct: 29  FVEKFAESLYETQNDG---SKKLSSIDGSIKSFAACLHELNRLKSRVGDRIRDYASASKQ 85

Query: 333 ACGKCTPAQKHLFKRFLEVVK 395
              +      HL ++F +V++
Sbjct: 86  VQNEYHQKSNHLREKFAQVLE 106


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
 Frame = +3

Query: 147  FALFAAVYCKETYS--SENDDLDIEALVGNIDSLKAFIGCFL-----ETSPCDAVSGDFK 305
            F+ FA     ET S  SE     +  +  N D   + +  FL      T  C  V    K
Sbjct: 1244 FSEFAKRVNTETLSLISEWCASSLSLIKANYDEFSSTVDDFLFRFSKATEQCLMVKY-IK 1302

Query: 306  KDIPEAVAEACGKCTPAQK-HLFKRFLEVVKDKLPQEYEAFKTKY 437
            KD+   + E+C      ++ HL+K+F +V+   L    E   T++
Sbjct: 1303 KDLEIEIEESCDFSIQTEEIHLYKKFKDVISSNLEFIVEIKNTRW 1347


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 156 FAAVYCKETYSSENDDL-DIEALVGNIDSLKAFIGCFL 266
           F   Y K+  SS N DL ++    G   +  AFI CFL
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFL 470


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 120 KMKGFYVLCFALFAAVYCKETYS 188
           ++ G ++LC  L A V CKE +S
Sbjct: 580 RLSGHFLLCAKLGAKVRCKELFS 602


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +1

Query: 325 WQKHVANVLQPRNIYSNVSLKSSRTSY--LKNTKPSKLNTIPKGKHFDALLSAVANS 489
           W+   A+ + PR+I    SL  + +S     +++P +L+ + + +H D+ +  V+ S
Sbjct: 795 WESEFASAVFPRSISKTTSLSVNNSSVNPSLDSEPVQLSNMEEPQHQDSSVVDVSTS 851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,744
Number of Sequences: 5004
Number of extensions: 62256
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)