Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_G07
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   6.1  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    26   8.1  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 135 QTHQCILSCLDPINPHIKGDPRPQVLQQFK 46
           QT   +L CLDP +P IK   +   L ++K
Sbjct: 785 QTMVILLDCLDPKDPTIKLQKQKACLNKYK 814


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 621 PGVSPWXAPSCALLFRPCRLPDYLSAFLPSGSVALSHSSRCRYL 752
           P  SP+ A S +L  +P R    L  F+   +  LSH S C+ L
Sbjct: 44  PSPSPF-ASSTSLASKPARYSKPLGLFVLDTNFLLSHLSLCQNL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,146
Number of Sequences: 5004
Number of extensions: 63947
Number of successful extensions: 179
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)