Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_G03
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    31   0.27 
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    27   4.4  
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    27   4.4  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.8  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    26   7.7  

>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 352 NKKESPDNSTSETSGDSLTNAGKEVKGRTHTFYQVLIDTRD 474
           N  +  D++ S  +GDS+    K + G   T+ +  +DT D
Sbjct: 544 NDNQDADDACSYNTGDSIPQVSKSINGHFETYSRTSMDTDD 584


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 330 PCKPWKKYHSTISKHFMQY*LSCVIFARG 244
           P K W+K+H  ++++  +Y +S  + A G
Sbjct: 104 PTKTWRKWHVKVNQNEKRYAISSAVAASG 132


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 556 GLDYVAHDDIIPYASVERVPLQHELFD 636
           G +Y+  DD+ P A++E++   H L D
Sbjct: 39  GFEYIEGDDLHPKANIEKMSQGHPLND 65


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 337 DRDATNKKESPDNSTSETSGDS 402
           D  +TN   S DN+TS+T  DS
Sbjct: 60  DLTSTNNTRSSDNTTSDTEDDS 81


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 559 LDYVAHDDIIPYAS 600
           +D+VAHDD IPYAS
Sbjct: 180 IDFVAHDD-IPYAS 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,055
Number of Sequences: 5004
Number of extensions: 68287
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)