Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_F21
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    44   2e-05
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   8.2  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   8.2  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   8.2  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    26   8.2  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
 Frame = +2

Query: 413 NEACIYANIHVPLYALPAAGETPTKPGLPILVFIHXXXXXXXXXXXXLY-GPEYLVT--- 580
           +E C++ NI VP      AGE P + G P+L FIH                P+ L     
Sbjct: 79  DEDCLFLNIWVP------AGEKPAE-GWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGS 131

Query: 581 -RNVVVITFNYRLNFFGFFS----LDTPKVPGNNGLRDMVTLLRWVKRNARAFGGNPDNV 745
               ++++  +RLN FGF +    L+      N G  D    L W  ++  +FGGN +N+
Sbjct: 132 PAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENI 191



 Score = 35.5 bits (78), Expect = 0.010
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = +1

Query: 250 FRGVPYAKQPVGXLRFKELQPAEPWTDYL-DATEEGPVC----YQNRRSLWKSDETSRHE 414
           F G+ YAK PVG LR++     E   DY  D  +   +C    Y NR++  ++ +    E
Sbjct: 21  FTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKYDE 80

Query: 415 *GMHLRQYTCAFVRPAGSW 471
             + L  +  A  +PA  W
Sbjct: 81  DCLFLNIWVPAGEKPAEGW 99


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 566 EYLVTRNVVVITFNYRLNFFGFFSLDTPKVPGNNGLRDMVTLLRWVKRNARAFG 727
           ++L+   V++  F Y  ++  FF   T  V     + ++VTLL  +++N  AFG
Sbjct: 556 DFLLAAEVILRFFAYLPDYRLFFRRYTNLVDIVLAVLNLVTLLPSIRKNPVAFG 609


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 681 MSLRPLFPGTLGVSNEKNPKKFNL 610
           + L+P  PG +G++N KN   FN+
Sbjct: 168 LMLKPYVPGFVGMNNIKNNDYFNV 191


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 746  SRCQDYLQRPWRSSSPNG 693
            SRCQ+  +R W+++ P+G
Sbjct: 1108 SRCQEDFERGWKANLPSG 1125


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 338 MPPRKVQFATRTDVLYGSLMKPHGMNEA 421
           +P  +V+    TD++  S + PHGMN A
Sbjct: 675 IPELRVRVINVTDLMVLSSLHPHGMNPA 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,809
Number of Sequences: 5004
Number of extensions: 67410
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)