Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_F19
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    27   4.8  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    26   6.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.3  

>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 341 IYGVRFKDHFPMALAEXEDLDRRARFDDAVTDVPAHFFNF 222
           IY VRF +  P +      +      +DAVTDVP +   F
Sbjct: 278 IYKVRFPESPPRSFRPPYGIQYYFYLEDAVTDVPEYVVPF 317


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 338 YGVRFKDHFPMALAEXEDLDRRARFDDAVTDVPAHFFNFLEDLPP 204
           + V  K+  P+A+ + + + R    + AV +V    FN  ED  P
Sbjct: 254 WSVAIKNGMPIAIEKAKAVSRVGNEEGAVGEVLERIFNIPEDYTP 298


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 870 NPXXPRGVXGFFXXXKNPPKPPPXXXKNK 784
           NP  P    GF    + PP PPP   K +
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,318
Number of Sequences: 5004
Number of extensions: 37135
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)