Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_F14
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    30   0.37 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    30   0.37 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   0.85 
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    27   3.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.4  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   6.0  

>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 323 TASGMSFLKSPETASQGDVSKKHPIKAFRESI 228
           ++ G+ FL SPE A+Q  +S+KH   A  +S+
Sbjct: 112 SSRGVHFLDSPELANQCGLSRKHIFDAVEDSV 143


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +1

Query: 283 AVSGDFKKDIPEAVAEACGKCTPAQKHLFKRFLEVVKDKLPQEYEAFKTKYDP 441
           A S  FK DI E + ++      A  HL+ R  E ++ KLP+E E F  K++P
Sbjct: 106 AYSVVFKDDISEEMLKS------ALNHLYDRMTEALRFKLPEEDEVF-DKHEP 151


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 154 FAAVYCKETYSSENDDLDIEALVGNID-SLKAFIGCFLETSPCDAVSGDFKKDIPEAVAE 330
           F   + +  Y ++ND       + +ID S+K+F  C  E +   +  GD  +D   A  +
Sbjct: 29  FVEKFAESLYETQNDG---SKKLSSIDGSIKSFAACLHELNRLKSRVGDRIRDYASASKQ 85

Query: 331 ACGKCTPAQKHLFKRFLEVVK 393
              +      HL ++F +V++
Sbjct: 86  VQNEYHQKSNHLREKFAQVLE 106


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 107 TIIQDEGFLRCCVLHCSLLSTVKR 178
           T+ QDE   R C L C++LS V R
Sbjct: 367 TLNQDEAVARGCALSCAILSPVFR 390


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
 Frame = +1

Query: 145  FALFAAVYCKETYS--SENDDLDIEALVGNIDSLKAFIGCFL-----ETSPCDAVSGDFK 303
            F+ FA     ET S  SE     +  +  N D   + +  FL      T  C  V    K
Sbjct: 1244 FSEFAKRVNTETLSLISEWCASSLSLIKANYDEFSSTVDDFLFRFSKATEQCLMVKY-IK 1302

Query: 304  KDIPEAVAEACGKCTPAQK-HLFKRFLEVVKDKLPQEYEAFKTKY 435
            KD+   + E+C      ++ HL+K+F +V+   L    E   T++
Sbjct: 1303 KDLEIEIEESCDFSIQTEEIHLYKKFKDVISSNLEFIVEIKNTRW 1347


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 154 FAAVYCKETYSSENDDL-DIEALVGNIDSLKAFIGCFL 264
           F   Y K+  SS N DL ++    G   +  AFI CFL
Sbjct: 433 FHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCFL 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,495,069
Number of Sequences: 5004
Number of extensions: 49183
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)