Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_F12
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    30   0.50 
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    28   1.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.7  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    27   4.7  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    26   6.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   8.2  

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +1

Query: 538 EYSQNPQFKAHVINLMTSLNLAVNNLNQPEIVAAM 642
           EY  + +F+ H++++M S   + + + +PE++A M
Sbjct: 465 EYRLHEEFQPHILDMMDSSTSSPSYITEPELIALM 499


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +1

Query: 328 GLATCGGVG-IRTW*TRSPGSRGER-YTQFKNHGPPX---NANSFATGSELLRRLFNTYP 492
           G+ TCG  G I  W  RS      R +TQ             N FATGSEL R L +   
Sbjct: 69  GVITCGSEGEIHLWDIRSQAKSAVRSWTQQSTPFTCIALNKKNQFATGSELTRSLASVQL 128

Query: 493 -DTKEYFKMVRK 525
            D +   K++R+
Sbjct: 129 WDVRSEQKLIRQ 140


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 47  AVPPHGSTAPRVSTHNTKVIVFILSVKYARENLSLTTNLIVE 172
           +V P+  + P++  H   +  F L V+YARE  SL+   I+E
Sbjct: 69  SVTPYSQSLPQIVYHQKTI--FDLIVQYAREGDSLSLQPILE 108


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 424 PPXNANSFATGSELLRRLFNTYPDTKEYFKMVRKLPEEEYSQNPQFK 564
           P    NS A  S+  +  F   P  K YF     +PE+     P+FK
Sbjct: 117 PHIGWNSCAVRSDTSKEFFGMRPHDKFYFVHSYMIPEKGLILPPEFK 163


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 29  GILKILAVPPHGSTAPRVSTH---NTKVIVFILSVKYARENLSLTTNLIVE 172
           G+L+ L  P  G+       H   NTK   F+L +   +ENL  + + I E
Sbjct: 438 GLLRSLMTPLQGNMVAPTGVHSQFNTKTEGFLLRIADIQENLIQSGSFITE 488


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 20  SL*GILKILAVPPHGSTAPRVSTHNTKVIVFILSVKYARENLSLTTNLIV--EATNSLIY 193
           SL G L + A         ++S H   + V   +V YARE +SL+  + V  + TN   Y
Sbjct: 521 SLEGCLNLAAYYEDAEFPQKLSNHLYNLCVKSSNVNYARECISLSIKIAVSHKLTNDETY 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,414,706
Number of Sequences: 5004
Number of extensions: 68559
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)