Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_F12
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           68   1e-13
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           68   1e-13
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.5  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 68.1 bits (159), Expect = 1e-13
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
 Frame = +1

Query: 448 ATGSELLRRLFNTYPDTKEYFKMVRKLPEEEYSQNPQFKAHVINLMTSLNLAVNNLNQPE 627
           A+G  ++   F  YP+ + YF      P  E   N +F+AH   ++T+LN  ++ L+ P 
Sbjct: 45  ASGIAVMTAFFKKYPEYQRYFTAFMDTPLNELPANKRFQAHCAGVITALNNVIDFLHDPG 104

Query: 628 IVAAMMTKLGESHRRRQIKEKNFHELKEVIVKLFIDVL--RLDDATLSAWGKTVEFWYKH 801
           ++ A +  L E H++R   ++ F  LKEV++++    L  +       AW KT++  +  
Sbjct: 105 LMEASLIGLVERHKKRGQTKEEFQNLKEVMLEVLRQALGKQYTPEVAEAWNKTLDMMFGK 164

Query: 802 IF 807
           I+
Sbjct: 165 IY 166



 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 318 MGTWFSYMWWGG-DPDVVNPVSGLTRREIHAVQKSWA 425
           MGT+  ++     D + ++  +GLT R+   VQ +WA
Sbjct: 1   MGTFLRFLGISSSDDNRIDQATGLTERQKKLVQNTWA 37


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 68.1 bits (159), Expect = 1e-13
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
 Frame = +1

Query: 448 ATGSELLRRLFNTYPDTKEYFKMVRKLPEEEYSQNPQFKAHVINLMTSLNLAVNNLNQPE 627
           A+G  ++   F  YP+ + YF      P  E   N +F+AH   ++T+LN  ++ L+ P 
Sbjct: 45  ASGIAVMTAFFKKYPEYQRYFTAFMDTPLNELPANKRFQAHCAGVITALNNVIDFLHDPG 104

Query: 628 IVAAMMTKLGESHRRRQIKEKNFHELKEVIVKLFIDVL--RLDDATLSAWGKTVEFWYKH 801
           ++ A +  L E H++R   ++ F  LKEV++++    L  +       AW KT++  +  
Sbjct: 105 LMEASLIGLVERHKKRGQTKEEFQNLKEVMLEVLRQALGKQYTPEVAEAWNKTLDMMFGK 164

Query: 802 IF 807
           I+
Sbjct: 165 IY 166



 Score = 25.8 bits (54), Expect = 0.53
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 318 MGTWFSYMWWGG-DPDVVNPVSGLTRREIHAVQKSWA 425
           MGT+  ++     D + ++  +GLT R+   VQ +WA
Sbjct: 1   MGTFLRFLGISSSDDNRIDQATGLTERQKKLVQNTWA 37


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 439 NSFATGSELLRRLFNTYPDTKEYF 510
           N   T  E    L+ + PD+++YF
Sbjct: 78  NKLPTTPEYNNHLYGSTPDSRDYF 101


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 617 FRLLTAKFNDVIKLMTC 567
           FR+L A  ND+IK   C
Sbjct: 397 FRILIANVNDLIKNTRC 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,798
Number of Sequences: 438
Number of extensions: 5066
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)