Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_F11
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 155 1e-38
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 52 8e-08
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.50
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 2.7
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.7
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.7
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 27 3.5
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 27 4.6
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 6.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 6.1
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 26 6.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.1
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 155 bits (375), Expect = 1e-38
Identities = 72/141 (51%), Positives = 100/141 (70%)
Frame = +2
Query: 149 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 328
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 329 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 508
++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 509 LGPEKTSFFQGSFYPYQDFKG 571
+ P KTSFFQ P + +G
Sbjct: 128 MEPGKTSFFQALGIPTKITRG 148
Score = 74.9 bits (176), Expect = 1e-14
Identities = 34/49 (69%), Positives = 42/49 (85%)
Frame = +3
Query: 537 RALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 683
+AL IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+
Sbjct: 137 QALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGM 185
Score = 43.2 bits (97), Expect = 5e-05
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 682 LXVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYQLLL 828
+ V +YD G +F+PEILD+ EDL + + + A+SL Y +L
Sbjct: 185 MDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTIL 233
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 52.4 bits (120), Expect = 8e-08
Identities = 48/136 (35%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Frame = +2
Query: 107 ATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLM 286
A + G E KA F + Q LD + +I N+ + +++IR +GS I M
Sbjct: 13 AQTEKKGHEGKAA----LFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKGSRI-FM 67
Query: 287 GKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP 451
GK +M KA+ ++H +N L KLL G VG +FT EV E+ VQ
Sbjct: 68 GKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQND 123
Query: 452 -ARPGAIAPLSVVIPA 496
AR GA+AP + VIPA
Sbjct: 124 FARAGAVAPFTHVIPA 139
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.50
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 279 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 386
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 2.7
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Frame = +3
Query: 396 AETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTPASVQR--RPLSSRALSIPTKISK 569
++ S S+ N S Q + P H SF P+ R PL S A S + ++
Sbjct: 2 SKNSFSSMANS--VTSFFQSLTTPNRHADPSFRPSRREKQSRLPTPLQSVAASAYSGVNA 59
Query: 570 GTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYG 680
++ND + +S + + + NISP G
Sbjct: 60 SQTGLLNDSRANSVTNLPNSSNTSQVGLNNISPAPVG 96
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 345 RAGLLSRWSLMALRIIVFFPMSTILEPR 262
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 423 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 298
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 381 ASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTPASVQRRPLSSRALSIPTK 560
A+ A+++ ++ N T+S + L L+ L + P+ PAS + P SS + ++
Sbjct: 324 ATTESAKSNSKTSANASNTQSAMDL-LIDLDIGSDAQSPSLPASSSQMPTSSFNMESLSQ 382
Query: 561 ISKGTIE 581
GT+E
Sbjct: 383 SLLGTVE 389
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 764 LARRSSGLMSRISGAKIVPESYTCLTXKT 678
LAR SS SGAK+VP+ + +T +T
Sbjct: 276 LARVSSSFGRPTSGAKVVPQIHNTVTVQT 304
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 6.1
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 519 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 349
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 348 SRAGL 334
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 438 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 277
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 26.2 bits (55), Expect = 6.1
Identities = 23/91 (25%), Positives = 37/91 (40%)
Frame = +3
Query: 312 PSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSF 491
PS + W T+ SR SR +S SP+ S + + K L L+ + +S++
Sbjct: 187 PSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTIPAIQKKKSL-LIEMMETESTY 245
Query: 492 PPTTPASVQRRPLSSRALSIPTKISKGTIEI 584
V L R L+ +K G E+
Sbjct: 246 VERLRHLVNDYALPLRDLAKSSKKLLGLYEL 276
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +3
Query: 315 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 494
S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576
Query: 495 PTTPAS 512
+TP +
Sbjct: 577 SSTPVT 582
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,750,629
Number of Sequences: 5004
Number of extensions: 80384
Number of successful extensions: 246
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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