Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_F11
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.7  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   8.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 268 LQYRAHGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLR 387
           LQ   H  +    Q H RP  QQ   ++     Q +R LR
Sbjct: 144 LQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLR 183


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 537 WKKEVFSGPRPVLWAGMTTD 478
           WK     GP+PV + G T D
Sbjct: 29  WKSRGVVGPKPVPFFGTTKD 48


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +3

Query: 369 RATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTPASVQRRPLSS 536
           R  L++CSP    L   T C      LQ V     H    F      +V +R LSS
Sbjct: 47  RVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSS 102


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 396 RVNTKPTLPLMCGNSFSRAGLL 331
           R +T P    +CG +FSR  LL
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLL 58


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 363 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 271
           CG  +   GLLS   L+   I V+F P+  I+
Sbjct: 202 CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 233


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 363 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 271
           CG  +   GLLS   L+   I V+F P+  I+
Sbjct: 78  CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,493
Number of Sequences: 438
Number of extensions: 5865
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)