Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_F05
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.7  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/55 (34%), Positives = 21/55 (38%)
 Frame = -2

Query: 911 GRGXXXHARXXGGGGXIXXXGPXRGXGXXXAGXGGXXKXHNRGWTXGXRXGXGGG 747
           GRG     R   GGG     G  RG      G  G  +   RG + G R G  GG
Sbjct: 17  GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARG-GRGGSSGGRGGAKGG 70


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 809 PPXXPTXNRXPXGAPPXKXPPPP 877
           PP  P     P G  P   PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +1

Query: 748 PPPXPXLXPXVXPRL*XXXXPPXPAXXXPXPLXGPXXXIXPPPP 879
           P P   L P           PP PA   P P   P      PPP
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,711
Number of Sequences: 5004
Number of extensions: 18334
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)