Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_F05
         (930 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    32   0.67 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   0.89 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   0.89 
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z68106-4|CAA92128.1|  112|Caenorhabditis elegans Hypothetical pr...    31   1.6  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    30   2.1  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    25   2.4  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical...    29   6.3  
U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +1

Query: 748 PPPXPXLXPXVXPRL*XXXXPPXPAXXXPXPLXGPXXXIXPPPP 879
           PPP P   P + P       PP P    P P   P     PPPP
Sbjct: 40  PPPLPCPPPPICP---PQFCPPPPMCPPPPPPPPPPMCPPPPPP 80


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 748 PPPXPXLXPXVXPRL*XXXXPPXPAXXXPXPLXGPXXXIXPPPPN 882
           PPP P   P   P +     PP P    P P  G      PPPP+
Sbjct: 348 PPPPPPRYPSAGPGM----YPPPPPSRPPAPPSGHGMIPPPPPPS 388



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/58 (36%), Positives = 22/58 (37%)
 Frame = +1

Query: 751 PPXPXLXPXVXPRL*XXXXPPXPAXXXPXPLXGPXXXIXPPPPNXLAWXXXPLPXXGR 924
           PP P   P V P       PP P    P P   P     PPPP+   W   P P  GR
Sbjct: 261 PPVPPPPPSVTPM-----PPPMP----PTPGMTPRP---PPPPSSGMWPPPPPPPPGR 306


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 748 PPPXPXLXPXVXPRL*XXXXPPXPAXXXPXPLXGPXXXIXPPPPN 882
           PPP P   P   P +     PP P    P P  G      PPPP+
Sbjct: 358 PPPPPPRYPSAGPGM----YPPPPPSRPPAPPSGHGMIPPPPPPS 398



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/58 (36%), Positives = 22/58 (37%)
 Frame = +1

Query: 751 PPXPXLXPXVXPRL*XXXXPPXPAXXXPXPLXGPXXXIXPPPPNXLAWXXXPLPXXGR 924
           PP P   P V P       PP P    P P   P     PPPP+   W   P P  GR
Sbjct: 271 PPVPPPPPSVTPM-----PPPMP----PTPGMTPRP---PPPPSSGMWPPPPPPPPGR 316


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 797 TXXXPPXXPTXNRXPXGAPPXKXPPPPXTXLH 892
           T   PP  P       GAPP   PPPP   +H
Sbjct: 790 TSSVPPPPPPLPPISSGAPPPPPPPPPGGLMH 821


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 797 TXXXPPXXPTXNRXPXGAPPXKXPPPPXTXLH 892
           T   PP  P       GAPP   PPPP   +H
Sbjct: 790 TSSVPPPPPPLPPISSGAPPPPPPPPPGGLMH 821


>Z68106-4|CAA92128.1|  112|Caenorhabditis elegans Hypothetical
           protein F41E7.5 protein.
          Length = 112

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/55 (36%), Positives = 21/55 (38%)
 Frame = -2

Query: 911 GRGXXXHARXXGGGGXIXXXGPXRGXGXXXAGXGGXXKXHNRGWTXGXRXGXGGG 747
           G G     R   GGG     GP RG      G GG       G + G R G GGG
Sbjct: 38  GGGPGQFGRGGFGGGPGSNYGPGRGGFGGNGGFGGNG-GFGGGPSYGGRGGFGGG 91


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 809  PPXXPTXNRXPXGAPPXKXPPPP 877
            PP  PT ++ P G P    PPPP
Sbjct: 1359 PPPPPTMSKAPTGVPLPVPPPPP 1381


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +2

Query: 809 PPXXPTXNRXPXGAPPXKXPPPPXTXLHGXXXPXRXXGG 925
           PP  P   +   GAPP   PPPP   L G   P    GG
Sbjct: 562 PPPPPPLPQNLSGAPPPPPPPPP--MLGGPPPPPPPPGG 598


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 25.4 bits (53), Expect(2) = 2.4
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
 Frame = +2

Query: 785 PGYXTXXXPPXX---PTXNRXPXGAPPXKXPPP 874
           PGY     PP     P     P G  P K PPP
Sbjct: 713 PGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPP 745



 Score = 23.0 bits (47), Expect(2) = 2.4
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +2

Query: 851 PPXKXPPPPXTXLHGXXXPXRXXGG 925
           P    PPPP   +H    P    GG
Sbjct: 766 PMSSFPPPPRGGMHHMPPPPSFRGG 790


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = -2

Query: 923 RPXXGRGXXXHARXXGGGGXIXXXGPXRGXGXXXAGXGGXXKXHNRGWTXGXRXGXGGG 747
           RP  G G     R  GG G     G   G        GG     N G   G   G GGG
Sbjct: 45  RPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGG 103


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/55 (32%), Positives = 19/55 (34%)
 Frame = +1

Query: 748 PPPXPXLXPXVXPRL*XXXXPPXPAXXXPXPLXGPXXXIXPPPPNXLAWXXXPLP 912
           P P P   P V P       PP      P P+  P     PPPP   A    P P
Sbjct: 74  PRPSPSCCPYVPPAPLPPPPPPASPCCGPSPVPAP---CCPPPPAPAAPCCPPPP 125


>Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical protein
            K07G5.1 protein.
          Length = 998

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 809  PPXXPTXNRX-PXGAPPXKXPPPP 877
            PP  P  NR  P GAPP   PP P
Sbjct: 935  PPPLPQRNRVGPGGAPPPLLPPKP 958


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/55 (30%), Positives = 17/55 (30%)
 Frame = +1

Query: 748 PPPXPXLXPXVXPRL*XXXXPPXPAXXXPXPLXGPXXXIXPPPPNXLAWXXXPLP 912
           PPP P   P   P       PP P      P   P     PPPP        P P
Sbjct: 76  PPPGPGGIPPPPPMF-AGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQP 129


>AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical
           protein Y116A8C.35 protein.
          Length = 285

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
 Frame = -2

Query: 905 GXXXHARXXGGGGXIXXXGPXRGXGXXXAGXGGXXKXHNRGW-TXGXRXGXGGG 747
           G     R   GGG     G   G G    G GG       GW   G   G GGG
Sbjct: 206 GHYPSQRGGSGGGGGGGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGGGRGYGGG 259


>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
 Frame = -2

Query: 920 PXXGRGXXXHARXX--GGGGXIXXXGPXRGXGXXXAGXGGXXKXHNR-GWTXGXRXGXGG 750
           P  GRG     R    GGGG     G   G G    G  G  +  +R G+  G R G  G
Sbjct: 311 PMGGRGGFGGDRGGYGGGGGRGGFDGGRGGGGGFRGGDRGGFRGGDRGGFRGGDRGGFRG 370

Query: 749 G 747
           G
Sbjct: 371 G 371


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,315,072
Number of Sequences: 27780
Number of extensions: 167533
Number of successful extensions: 914
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)