Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_F04
         (879 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.59 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 377  TVRPRKCLMTVQARPLPSTTPNSRSSAPNPVFTFTTTKTAALRNTERSTTV 529
            T +P     +    P  +TT   R++   P  T TTT+        + TT+
Sbjct: 1036 TTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTI 1086


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 410 QARPLPSTTPNS----RSSAPNPVFTFTTTKTA 496
           Q  P PS+TP+S    R+S  NP ++  +  T+
Sbjct: 72  QGAPSPSSTPSSLPTQRTSTSNPTYSSRSVMTS 104


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 215  YTDNSSGKKSVVTTIWSSSLVVGAP-HTKLAARKATTSNSRIFHL 84
            + +N  G+ SV     +  L+V AP H    A  +TT+NS  F L
Sbjct: 1377 HVENDYGQDSV-----THQLIVNAPPHAPQIALTSTTTNSLTFKL 1416


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +2

Query: 371 TKTVRPRKCLMTV----QARPLPSTTPNSRSSAPNP 466
           T TV+   C  T     +A P P   P S S +P P
Sbjct: 247 TATVQLSTCTRTTLKNNRASPYPMQRPKSASLSPPP 282


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,448
Number of Sequences: 336
Number of extensions: 3545
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)