Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_F04
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.87 
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    28   1.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.5  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   3.5  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   4.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   6.1  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   8.1  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    26   8.1  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +2

Query: 404 TVQARPLPSTTPNSRSSAPNPVFTFTTTKTAALRNTERSTTVS 532
           TV +  + STT +S SS+P+   T TTT  ++  ++  S++ S
Sbjct: 126 TVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSS 168


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 77  RYKDEIYGYYSSSLSWRPVSCAALRPLTMRTRSS 178
           R     Y + S SL WRPV+   + P T  T+ S
Sbjct: 74  RKATRFYRWLSRSLKWRPVTYETVYPQTYETQMS 107


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 371 TKTVRPRKCLMTVQARPLPSTTPNSRSSAPNPVFTFTTTKTAALRNTERSTT 526
           T TV P     T    P  ST+    SS+P P  + + T + ++  T  STT
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTT 353



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 371 TKTVRPRKCLMTVQARPLPSTTPNSRSSAPNPVFTFTTTKTAALRNTERSTT 526
           T TV P     T    P  ST+    +S+P P  + + T + ++  T  STT
Sbjct: 248 TPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTT 299


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 428 STTPNSRSSAPNPVFTFTTTKTAALRNTERSTTVSL 535
           S   N  +  PNP   FTTT T      ER  T+ L
Sbjct: 353 SEDQNDIAPYPNPYQNFTTTNTTVKNPFERFDTIDL 388


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 475 VYDNEDGSVKKYGTVDDSVIDIVQVNGTGPLYVLTEDHTV--YKVTEEG 615
           V+DN   S   +GT  D +  I   +    LYVL E  +V  Y++T+ G
Sbjct: 230 VFDNFIPSFFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSCYELTKNG 278


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 445 AFFGAKSGIYVYDNEDGSVKKYGTVDDSVI 534
           AFF +K  I +  +EDG+VK + T+  S+I
Sbjct: 234 AFFHSKFPIIISGSEDGTVKIWHTLSYSLI 263


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 413 ARPLPSTTPNSRSSAPNPVFT 475
           AR  P +T  SRSS+ NPV T
Sbjct: 212 ARSAPRSTQRSRSSSANPVTT 232


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 189 FLSRRIVGIQQPKRHNQYNSTIELNQL 269
           F  R +  +    RHN++N  I+LN++
Sbjct: 158 FKERNLESMDYLMRHNEFNDAIDLNEV 184


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 490 DGSVKKYGTVDDSVIDIVQVNGTGPLYVLTED----HTVYKVTEEGNK 621
           DG V+   T     +D++ V+ TG  + L  D     TV+++T E  K
Sbjct: 73  DGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,824
Number of Sequences: 5004
Number of extensions: 61098
Number of successful extensions: 231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)