Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_F04
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0066 - 536281-537196,537397-537452 32 0.53
03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,256... 30 2.1
02_05_1332 + 35758657-35758728,35758959-35760689 30 2.1
08_02_1603 - 28156141-28157025,28157547-28157999 30 2.8
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 30 2.8
01_06_0195 + 27379266-27379300,27379870-27382174 29 4.9
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 29 6.5
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 29 6.5
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360... 29 6.5
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 8.6
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957... 28 8.6
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 323 PTSIMARLRNTRAFIDTKTVRPRKCLMTVQARPLPSTTPNSRSSAPNPVFTF 478
PT R T I T TVRP L P P+T P++ ++ P P + +
Sbjct: 243 PTPTTTRASPTPPPIPTATVRPPPPLPRATVTPTPTTPPSTATTTPIPTWVW 294
>03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,
2567166-2567297,2567517-2567567,2567769-2567840,
2568590-2568680,2568988-2569066,2569147-2569210,
2569917-2570020,2570182-2570287,2572080-2572157,
2572649-2572801,2573039-2573128,2573284-2573349,
2573485-2573583,2573660-2573734,2574455-2574514,
2574909-2574998,2575202-2575323,2575462-2575591,
2575662-2575741,2576167-2576302,2577005-2577086,
2578475-2578620,2578796-2578876,2578994-2579094,
2579770-2580008,2580100-2580209,2580518-2580646,
2580728-2580802,2581455-2581586,2582298-2582470,
2582566-2582688,2582771-2582831,2582910-2583005,
2583251-2583351,2584014-2584119,2584673-2584786,
2584888-2584962,2585619-2585711,2585883-2585954,
2586253-2586338,2586434-2586527,2586596-2586703,
2586782-2587021
Length = 1579
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3
Query: 808 PFFMTNGX*LVSPELGFQEGQRFPAPHFRSQLSAFWPGRKSK 683
P N LVS L F + QRF AP+F SQ+ A GR S+
Sbjct: 1471 PVIKANAVCLVSCMLSFLDDQRFLAPYF-SQVFAILVGRLSQ 1511
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = +1
Query: 430 DDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVQVNGTGPLYVLTEDHTVYKVTE 609
D FG+K + +E+GS + ++D ++ + G G ED VY +
Sbjct: 472 DSGNATDFGSKREEHSGGDEEGSQNDFRNIEDDIVG-MNTEGNGEEAFQPEDDVVYGDSL 530
Query: 610 EGNKKVAVDGAKDAQQ 657
+A + A DA +
Sbjct: 531 SPADDIAAEAADDASR 546
>08_02_1603 - 28156141-28157025,28157547-28157999
Length = 445
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +1
Query: 361 LYRYKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVID 537
LYR NG A+ D +AS+ D+ LA+F +G D+ DGS+ +G VI+
Sbjct: 48 LYRLPNG-ASDFPDAVARMSASLSDA-LAYFYPLAGRIRQDDHDGSLSIHGQHGAEVIE 104
>01_06_1446 - 37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 383 RPRKCLMTVQARPLPSTTPNSRSSAPNPVFTFTTTKTAALRNTERSTTV 529
RPR + V A L N+ ++ P PV +F T +RN R T V
Sbjct: 1025 RPRAIQVAVDAATLSRFALNTTAN-PRPVLSFNLTAGLTIRNPSRRTAV 1072
>01_06_0195 + 27379266-27379300,27379870-27382174
Length = 779
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +1
Query: 475 VYDNEDGSVKKYGTVDDSVIDIVQVNGTGPLYVLTEDHTVYKVTEEGNKKVAVDGAKDAQ 654
+YD + S + + D SV DI + + G + + + +++ + K A GA +
Sbjct: 181 MYDGPEISSIYWPSPDYSVFDIGRTSYNGSRNAILDTEGHFLSSDKLDIKAADWGAGINR 240
Query: 655 QIMLDYSGNVYFY 693
++ LDY GN+ Y
Sbjct: 241 RLTLDYDGNLRMY 253
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 412 SSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVQVNGT 558
SS DDS A SG+ + N K G + D+V++ NGT
Sbjct: 382 SSANKADDSSTASDTKSSGVTMSINASNPDKSVGGLQDAVVETKHSNGT 430
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 421 ASIDDSKLAFFGAKSGIYVYDNEDGSVKKY 510
ASI+ +K SG ++YDN DGS+ ++
Sbjct: 1041 ASINKNKAKVTDYSSGSFLYDNRDGSLSQH 1070
>02_01_0497 +
3607227-3607462,3607600-3607661,3608138-3608286,
3608418-3608538,3608638-3608793,3609041-3609086,
3609414-3609480,3609553-3609629,3610180-3610249,
3610956-3611014,3611105-3611213,3611552-3611611,
3611701-3611763,3612007-3612131,3612260-3612422,
3612506-3612565,3612802-3612860,3613057-3613138,
3613227-3613290,3613506-3613573,3613648-3613758
Length = 668
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 523 DSVIDIVQVNGTGPLYVLTEDHTVYKVTEEGNKKVAVD 636
DSV+ I + G LY + ED Y++ +GN +D
Sbjct: 273 DSVVTIQGLTPAGYLYAIGEDGKSYELHPDGNSVTMID 310
>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 370 YKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSV 531
Y+ GT + + DD S ++SI + +A + V N + + GT+D +V
Sbjct: 2061 YEPGTGSSVADDNNSPSSSITGTLVALRSTQMITTVLPNANITPNNLGTLDSAV 2114
>03_03_0105 +
14491198-14493636,14494793-14494957,14495647-14495760,
14496223-14496487,14497164-14497237,14497851-14497928
Length = 1044
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 796 TNGX*LVSPELGFQEGQRFPAPHFRSQLSAF 704
T+G + SPEL GQ FP H SQ AF
Sbjct: 815 TDGAVVPSPELKLVRGQDFPVYHKPSQKPAF 845
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,293,591
Number of Sequences: 37544
Number of extensions: 391341
Number of successful extensions: 1184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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