Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_F01
         (1339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    28   2.5  

>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 873 KKKKKXXXKKXKKKKXXXXXXXXKKKKXGXPKXXKKKKK 989
           KK +K   KK K+ K        KK+K G     +KKKK
Sbjct: 190 KKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKK 228



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 875  KKKKXXXXKXKKKKKXXXXXXXKKKKXGXXKKX*KKKKXXXKKKK 1009
            K +K    K K+ KK       KK+K G   K  KKKK    K K
Sbjct: 191  KLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDK 235



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = +2

Query: 875  KKKKXXXXKXKKKKKXXXXXXXKKKKXGXXKKX*KKKKXXXKKKK*XGGXEKNEXXXKKK 1054
            +K+K    K K KKK         KK     K  KKKK   KK K     ++      K+
Sbjct: 166  EKRKKHSSKKKSKKKTSTGSALDPKKLEKITK--KKKKEHKKKDKESSSKKRKSGSSDKE 223

Query: 1055 XKK 1063
             KK
Sbjct: 224  EKK 226



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +2

Query: 875  KKKKXXXXKXKKKKKXXXXXXXKKKKXGXXKKX*KKKKXXXKK---KK*XGGXEKNEXXX 1045
            K+KK    K  KKK         KK     KK  K+ K   K+   KK   G    E   
Sbjct: 167  KRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKK 226

Query: 1046 KKKXK 1060
            KKK K
Sbjct: 227  KKKIK 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 754,503
Number of Sequences: 5004
Number of extensions: 6012
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 735255860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)