Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_E23
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    28   0.13 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    28   0.13 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    27   0.30 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.5  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 247 RASCHIRVGSWIHTHRHRVQIWNRGPSGKG 336
           R  CHI + S+ +T R     WN GP+  G
Sbjct: 149 RQLCHIEIESFGYTMRDIRYKWNEGPNSVG 178


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 247 RASCHIRVGSWIHTHRHRVQIWNRGPSGKG 336
           R  CHI + S+ +T R     WN GP+  G
Sbjct: 88  RQLCHIEIESFGYTMRDIRYKWNEGPNSVG 117


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 324 WSSIPYLYAVSMCVYPASNAYMTACSVSLVT*TTFPLGR 208
           WS  PY++  + C+   S A  T+ + +++T T F + R
Sbjct: 115 WSHFPYVFGEAFCII-QSFAAETSANATVLTITAFTVER 152


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 247 RASCHIRVGSWIHTHRHRVQIWNRGPSGKG 336
           R  CHI + S+ +T R     WN G    G
Sbjct: 149 RQLCHIEIESFGYTMRDIRYKWNAGLQSVG 178


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +3

Query: 603 RHLQL*PRTNPEDHRQRTGETFGFADRVKPQPATTRALQVLPRKRHSGDGVHSLRVAVPR 782
           RH+++    N ++  QR    FG  D  + +P T +  +   R   S       R+ +  
Sbjct: 209 RHMEVIKIKNFDNCDQRINYHFGMTDNSRLEPGTNKNGKFFSRSSTS-------RIVISE 261

Query: 783 AXLNQTLLRRGLTMNASSVSPR 848
           + L    ++  +T +   VSPR
Sbjct: 262 S-LKHFTIQSSVTTSKMMVSPR 282


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 433 GITCSLSW*EFQSLVV-IKIDSLFSPSENFLVQGPSHLVLDSI 308
           G+   +++ ++ ++ V +  D++  P E+F   G  ++VLD+I
Sbjct: 169 GVEIGINFDKYDNIQVNVSGDNVPQPIESFEAAGLRNIVLDNI 211


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 256 CHIRVGSWIHT 288
           C I  GSW+H+
Sbjct: 183 CRINFGSWVHS 193


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 577 KKLGLTKSIGISNFNQEQIQRIIDSGLEKP 666
           K  GLTK++ I N+N +  + I+ S    P
Sbjct: 94  KLYGLTKNLEIKNYNIDWDKCILSSESYNP 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,855
Number of Sequences: 438
Number of extensions: 5553
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)