Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_E21
         (885 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009393-1|AAH09393.1|  155|Homo sapiens HRBL protein protein.         32   2.4  
BC017329-1|AAH17329.1|  481|Homo sapiens HIV-1 Rev binding prote...    32   3.2  
AF053356-14|AAC78803.1|  318|Homo sapiens nucleoporin protein.         32   3.2  
AF015042-1|AAD01550.1|  481|Homo sapiens RAB-R protein protein.        32   3.2  

>BC009393-1|AAH09393.1|  155|Homo sapiens HRBL protein protein.
          Length = 155

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +1

Query: 52  FASSAGNHEVCLNSWLGL*PSRSAVQYQSRAP*RQKMWMPVFVEKQKKILSFFQDVSQL 228
           F  S GN EVC   WLGL  +R+++   SR P + K ++    EK++   +F + + QL
Sbjct: 98  FLQSRGN-EVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWPDTFPRRLCQL 155


>BC017329-1|AAH17329.1|  481|Homo sapiens HIV-1 Rev binding
           protein-like protein.
          Length = 481

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 52  FASSAGNHEVCLNSWLGL*PSRSAVQYQSRAP*RQKMWMPVFVEKQK 192
           F  S GN EVC   WLGL  +R+++   SR P + K ++    EK++
Sbjct: 98  FLQSRGN-EVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKR 143


>AF053356-14|AAC78803.1|  318|Homo sapiens nucleoporin protein.
          Length = 318

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 52  FASSAGNHEVCLNSWLGL*PSRSAVQYQSRAP*RQKMWMPVFVEKQK 192
           F  S GN EVC   WLGL  +R+++   SR P + K ++    EK++
Sbjct: 24  FLQSRGN-EVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKR 69


>AF015042-1|AAD01550.1|  481|Homo sapiens RAB-R protein protein.
          Length = 481

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 52  FASSAGNHEVCLNSWLGL*PSRSAVQYQSRAP*RQKMWMPVFVEKQK 192
           F  S GN EVC   WLGL  +R+++   SR P + K ++    EK++
Sbjct: 98  FLQSRGN-EVCRKIWLGLFDARTSLVPNSRDPQKVKEFLQEKYEKKR 143


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,890,612
Number of Sequences: 237096
Number of extensions: 2198840
Number of successful extensions: 4021
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4021
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)