Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_E21
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 33 0.36
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 33 0.36
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 30 1.9
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 30 1.9
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 30 1.9
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 30 2.5
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 30 2.5
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 30 2.5
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 30 2.5
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 30 2.5
AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical ... 29 4.4
Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical p... 29 5.8
Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF034078-1|AAC02976.1| 815|Caenorhabditis elegans putative E1-E... 29 5.8
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 32.7 bits (71), Expect = 0.36
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +1
Query: 184 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 363
K KK+ S F + +T D YY + + + + + +TN V+E +K Y P + +
Sbjct: 51 KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99
Query: 364 FSVFYDKMRDEAIALFHLFYYAKD 435
+S +EAIA FH +Y K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 32.7 bits (71), Expect = 0.36
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +1
Query: 184 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLE 363
K KK+ S F + +T D YY + + + + + +TN V+E +K Y P + +
Sbjct: 51 KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99
Query: 364 FSVFYDKMRDEAIALFHLFYYAKD 435
+S +EAIA FH +Y K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 637 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 741
+++P IHKE F YK+N A+LY E
Sbjct: 227 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 261
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 637 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 741
+++P IHKE F YK+N A+LY E
Sbjct: 211 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 245
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 637 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 741
+++P IHKE F YK+N A+LY E
Sbjct: 208 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 242
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 642 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 493
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 352 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 486
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 352 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 486
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 642 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 493
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 642 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 493
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical
protein Y40C7B.1 protein.
Length = 916
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +1
Query: 163 WMPVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRT 339
W P+ ++ L+ +D L + +EY I + D+ N + N+ A E L++ +T
Sbjct: 385 WQPLPFPGYEEYLNIKEDCDNLPSHEEYKTIREACDVFPNYTEFINRVANYEMLEIGKT 443
>Z98866-10|CAE54923.1| 1089|Caenorhabditis elegans Hypothetical
protein Y49E10.11b protein.
Length = 1089
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/65 (21%), Positives = 31/65 (47%)
Frame = +1
Query: 166 MPVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGF 345
+P+ ++ +++ FFQ + +N D E Y + D N + +F+ +TG
Sbjct: 334 IPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKTGT 392
Query: 346 MPKNL 360
+ +N+
Sbjct: 393 LTRNV 397
>Z98866-9|CAB11550.4| 1139|Caenorhabditis elegans Hypothetical
protein Y49E10.11a protein.
Length = 1139
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/65 (21%), Positives = 31/65 (47%)
Frame = +1
Query: 166 MPVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGF 345
+P+ ++ +++ FFQ + +N D E Y + D N + +F+ +TG
Sbjct: 334 IPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKTGT 392
Query: 346 MPKNL 360
+ +N+
Sbjct: 393 LTRNV 397
>AF034078-1|AAC02976.1| 815|Caenorhabditis elegans putative E1-E2
ATPase protein.
Length = 815
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/65 (21%), Positives = 31/65 (47%)
Frame = +1
Query: 166 MPVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGF 345
+P+ ++ +++ FFQ + +N D E Y + D N + +F+ +TG
Sbjct: 10 IPISLQVTLEVVRFFQAI-YINNDIEMYDVNSDSCAIARTSNLNEELGQVKFIMSDKTGT 68
Query: 346 MPKNL 360
+ +N+
Sbjct: 69 LTRNV 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,919,974
Number of Sequences: 27780
Number of extensions: 363645
Number of successful extensions: 973
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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