Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_E20
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    83   7e-17
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    28   2.1  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   4.9  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 82.6 bits (195), Expect = 7e-17
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = +3

Query: 90  AHKPFIIKRKLAKKLKQNXPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 236
           +HK F  K+KLAK  +QN PIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 3   SHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 248 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 156
           ++S+ L    +P TP S  +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = -3

Query: 262 LHLTHSQAYNLSFVLLQ*RLLALYRIVFPVRILTH*GMGLFCFSFLANLRLIINGLWARH 83
           LH+ H + Y +S +L +   +  Y+++ P        MG   F   A    I NG+ A  
Sbjct: 73  LHIGHVRVYTISDILSRYYRMKGYKVIHP--------MGWDAFGLPAENAAIENGISASS 124

Query: 82  FEQSSCQKQRQQ 47
           +   + +K ++Q
Sbjct: 125 WTYENIKKMKEQ 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,689
Number of Sequences: 5004
Number of extensions: 31298
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)