Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_E18
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 90  TPHYPKQQAANIVKSKILRIPYSXI 16
           T H+ K  A+     +++R+PY+ +
Sbjct: 63  TDHHLKWNASEFAGIRVIRVPYNRV 87


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 726 TTTSGPKRIPSLTARGAGDQAPLQ-HHHLR 812
           TTT+      + TA G   Q  LQ HHHL+
Sbjct: 116 TTTATAAATATTTATGLIKQETLQRHHHLQ 145



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 680 ATTTIQFLVKVVTHQHHH 733
           ATTT   L+K  T Q HH
Sbjct: 125 ATTTATGLIKQETLQRHH 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,321
Number of Sequences: 438
Number of extensions: 4329
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)