Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_E14
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   5.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 467 PQKAPPXPXAXPPXXKTAKXPPXPP 393
           P KAPP P + PP  + A     PP
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPP 185


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +2

Query: 635 PXXSPXXTPXPPPPXXXXXXXXXXXXGXPXXXPXYXPXGSPPXXPPXXPPXFLPXG 802
           P   P   P    P              P   P   P  +PP  PP  PP  LP G
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPS-LPMG 442


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 467 PQKAPPXPXAXPPXXKTAKXPPXPPXXWPKK 375
           P   PP P   P     ++ PP PP  + KK
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -3

Query: 467 PQKAPPXPXAXPPXXKTAKXPPXPPXXWPKKGT 369
           P    P   A  P    A  PP PP   P  GT
Sbjct: 232 PMAGQPIAIAPVPAPNQAALPPIPPQALPANGT 264


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/55 (29%), Positives = 18/55 (32%)
 Frame = +2

Query: 620 PXXXXPXXSPXXTPXPPPPXXXXXXXXXXXXGXPXXXPXYXPXGSPPXXPPXXPP 784
           P    P  +P   P PPP             G P   P     G+ P  PP  PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMG--------GPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.146    0.530 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,636,117
Number of Sequences: 5004
Number of extensions: 16293
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)