Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_E09
         (949 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    23   5.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 223  PHPSSSLKKSQAEAQLTIIMQMMATNTIFVKYIFKTTCGLYGFY 92
            P P  + K   A  Q +  ++ +   ++F+K + +T  G Y  Y
Sbjct: 1304 PAPEVTWKVRGAVLQSSDRLRQLPEGSLFIKEVDRTDAGEYSCY 1347


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 114 VVLKMYFTKIVFVAIICIMIVSCASAWDFFKELEGCGS 227
           VV+      ++  A+I   I+  +SA  +FK +  CGS
Sbjct: 18  VVIVSSLIILISYALILFNILHMSSAEGWFKAIGTCGS 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,932
Number of Sequences: 438
Number of extensions: 2803
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)