Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_E08
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    27   2.8  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   3.7  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    26   6.5  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    26   8.6  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   8.6  

>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 545 DSLDENVWQIEQYIPIYHPEYPFVSYQRNNLTV 643
           D+ D   W + QY+      YP + ++ + +TV
Sbjct: 32  DNYDSFTWNVVQYLSNLEKRYPIMVFRNDEITV 64


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/47 (21%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 480 QQRRECEAAKRVPDKQY-SRSNLIPWTKTFGKSSSIYRFITPNTPSC 617
           Q + + E++  + D+   +++ ++ W+K  G   S+++F++   P C
Sbjct: 653 QAQSDFESSVELKDRSIVTKTTIMSWSKYQGTKESLFQFLSIYIPEC 699


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 106 VSDFIYKNIVRSNARCENTSFSPERTSNIRSRCPQ 210
           +SD    +I ++NA C N  F  E+ S+   RC Q
Sbjct: 281 ISDSTPSDIAQANASCSNAEFK-EKVSSAIIRCLQ 314


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 106 VSDFIYKNIVRSNARCENTSFSPERTSNIRSRCPQNDTVRVPRQLEP 246
           +   + +N+V     C+   F    +S +RS  P N  V+V    +P
Sbjct: 315 IQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDP 361


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
            1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 456  ILRNQNVSQQRRECEAAKRVPDKQYSRS 539
            ++ N      RRE E  +R  +++Y RS
Sbjct: 920  VIENAGTEAMRREAEERRRAEEEEYERS 947


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,600,464
Number of Sequences: 5004
Number of extensions: 77632
Number of successful extensions: 230
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)