Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_E08
(914 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0423 + 23349588-23350084,23350133-23350346 29 3.9
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205... 29 6.8
03_05_0469 + 24640925-24641081,24641292-24641644,24641870-246420... 29 6.8
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088... 29 6.8
03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574 29 6.8
01_06_0272 - 28065896-28065991,28066069-28066227,28066918-280669... 29 6.8
07_03_1107 - 24024387-24024497,24025799-24026410 28 9.0
06_01_0303 + 2194345-2194414,2195228-2195328,2195818-2196657,219... 28 9.0
06_01_0278 - 2042574-2042612,2042738-2043055,2043150-2043296,204... 28 9.0
>11_06_0423 + 23349588-23350084,23350133-23350346
Length = 236
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 398 EKTNQQFTVTELEDPNASTDSQKPECKPTKTRVRGGKACAGQTIFEEQFDSLDENVWQI 574
E Q +T E+ A DS +P C ++ + AG++ E D LDE + I
Sbjct: 11 ESQFNQCAITAEEEAAALPDSTEPPCTNVASQDEESGSAAGESESESDSDDLDEVIADI 69
>06_01_0280 -
2056449-2056487,2056613-2056930,2057025-2057171,
2057273-2058112,2059044-2059117,2059515-2059647,
2059804-2059941
Length = 562
Score = 28.7 bits (61), Expect = 6.8
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 92 CGRVLCLILFIKISYAQMPDVKIQAFRPKGLRISVQDVPKMTLFAFQGNLNHKLDSTSVG 271
C R++CL K+ + ++ F L++ + P +++FAFQG+ K +
Sbjct: 304 CNRIVCL----KVPCLLQRLISLKVFGCDKLKLIENEAPNVSMFAFQGD---KTELKLGE 356
Query: 272 TLSAEVLDPVNGRWVY 319
TL + L V +VY
Sbjct: 357 TLQIKSLCMVRSGYVY 372
>03_05_0469 +
24640925-24641081,24641292-24641644,24641870-24642043,
24642382-24642506,24643011-24643059,24643741-24643899,
24644037-24644219
Length = 399
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 622 VGHEGVFGVINRYILLDLPNVFVQ 551
+ H+GV G IN + L LPNV V+
Sbjct: 318 ISHDGVIGTINNFRLGRLPNVQVE 341
>03_02_0933 -
12505196-12505286,12505759-12505814,12508780-12508873,
12508949-12509079,12509187-12509290,12509585-12509680,
12510752-12510860,12511252-12511296
Length = 241
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +3
Query: 615 CPTSVII*QYLPQMETYI---LTPNFNNICPGFLDDSIYSGTLNXFSGCTSSAXACI 776
CP + + ++P + ++ NFN FLD S SGC +S A I
Sbjct: 82 CPGQIELFTHVPVLRNFVEHLKRKNFNVCAVYFLDSQFVSDVTKYISGCMASLSAMI 138
>03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574
Length = 602
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 622 VGHEGVFGVINRYILLDLPNVFVQ 551
+ H+GV G IN + L LPNV V+
Sbjct: 376 ISHDGVIGTINNFRLGRLPNVQVE 399
>01_06_0272 -
28065896-28065991,28066069-28066227,28066918-28066966,
28067350-28067474,28067834-28068004,28068222-28068571,
28069322-28069478
Length = 368
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 622 VGHEGVFGVINRYILLDLPNVFVQ 551
+ H+GV G IN + L LPNV V+
Sbjct: 316 ISHDGVIGTINNFRLGRLPNVQVE 339
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 579 CSICQTFSSRES---NCSSNIVCPAHALPPRTL 490
C IC FSSR + +CS ++ +H L RTL
Sbjct: 206 CPICDVFSSRCAAYLDCSCSVTALSHRLKTRTL 238
>06_01_0303 +
2194345-2194414,2195228-2195328,2195818-2196657,
2196743-2196889,2196985-2197365
Length = 512
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 92 CGRVLCLILFIKISYAQMPDVKIQAFRPKGLRISVQDVPKMTLFAFQGN 238
C R++CL K+ + ++ F L++ + P +++FAFQG+
Sbjct: 246 CDRIVCL----KVPCLLQRLISLKVFGCDNLKLIENEAPNVSIFAFQGD 290
>06_01_0278 -
2042574-2042612,2042738-2043055,2043150-2043296,
2043382-2044221,2045182-2045282,2045666-2045791,
2047124-2047214
Length = 553
Score = 28.3 bits (60), Expect = 9.0
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 92 CGRVLCLILFIKISYAQMPDVKIQAFRPKGLRISVQDVPKMTLFAFQGNLNHKLDSTSVG 271
C R++CL K+ + ++ F L++ + P +++FAFQG+ K +
Sbjct: 295 CDRIVCL----KVPCLLQRLISLKVFGCDKLKLIENEAPNVSIFAFQGD---KTELKLGE 347
Query: 272 TLSAEVLDPVNGRWVY 319
TL + L V +VY
Sbjct: 348 TLQIKSLCMVRSGYVY 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,231,930
Number of Sequences: 37544
Number of extensions: 486353
Number of successful extensions: 1398
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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