Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_E06
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    29   0.87 
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    29   1.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   1.5  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   3.5  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   4.7  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   6.1  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   8.1  

>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 248 PGKCSRDTPPSQGGVPRHRRNRLLATNSNCTKPDHSRSH 132
           P   S  TP +QG +P H   +L ++ +   +P+  RS+
Sbjct: 54  PNSSSNSTPANQGSLPSHTNPQLYSSITRKERPELFRSY 92


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 122 FRRNGFGCDQVLCSCCWLPGVCFADVS-ELPPVTEVCLGCI 241
           FR  GF   + +  C  L G+CFA  S E+ PV  V  G +
Sbjct: 114 FRWTGFTFIEGILICTGLTGLCFATFSYEVSPVVSVLSGVL 154


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 285 PSHC-RPCLHPEIAWQMQPRHTSVTGGSSETSAKQTP 178
           PSH  R  LHP ++ Q QP   S + G ++ + +Q P
Sbjct: 54  PSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPP 90


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 473 VNCYDYMAIHKKGGYGCTGELP 538
           +N  DY+ ++  GGYGC+ + P
Sbjct: 105 LNPSDYVIVYIPGGYGCSFDFP 126


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 272 DLACIQR*PGKCSRD-TPPSQGGVPRHRRNRLLATNSNCTKP 150
           D++  Q   G+ + D T PS   +PRH + +L  T S   KP
Sbjct: 318 DVSDAQNSLGQSAVDLTTPSSPPIPRHTKPKLSTTQSTPVKP 359


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 291 VSPSHCRPCLHPEIAWQMQPRHT 223
           VS  HC  C H E  W    R+T
Sbjct: 204 VSLKHCEDCFHWEAVWSSITRNT 226


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 547 IVKRKFAGAPVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLDG---LRGAVRVHSAARVG 377
           I +R  AG  + SLL   + VI V+H ++V         VL G   + G V +  + R G
Sbjct: 252 IKQRLKAGRVIRSLLATTNYVIVVEHDLSVLDYLSDFVCVLYGVPSMYGVVTLPYSVREG 311

Query: 376 I 374
           I
Sbjct: 312 I 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,558
Number of Sequences: 5004
Number of extensions: 69556
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)