Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_E05
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    32   0.093
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   4.6  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   8.1  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 702 DEFFQTADYVNNVRLVI*TIFIFKVLFETKFNMYGGDNELDLLQQEEAER 553
           D  + + DY+   R  +  + I+ +LFE+KFNMYG   E ++    E E+
Sbjct: 538 DNLWSSTDYL---RATLGALTIYLLLFESKFNMYGNKAE-EISHMSEVEQ 583


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 795 YGLVLKICIWNSTKYFIILYLAITW 869
           + L+LK+ +W +  Y+ +  L  TW
Sbjct: 25  FDLILKVLLWTAPWYYCLTTLFFTW 49


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 346 SVCKKEKKYIDGELVVSRGCTWKRQDDFE 432
           +V   +  Y++ E+V  +   W+R  DFE
Sbjct: 32  TVTSSDGSYVEYEIVHQKRSVWRRYSDFE 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,920
Number of Sequences: 5004
Number of extensions: 64848
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)