Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_E04
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    41   2e-04
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    29   1.2  

>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 25/77 (32%), Positives = 39/77 (50%)
 Frame = +1

Query: 592 KVGDQVVALPEYRAWAELVSVPAQYVYALPEGMSALDAVAITTNYVVAYLLLFXMANLTP 771
           KVGD+VV L  + A+A+  +VP   V  + E +    A A     + AY L+     +  
Sbjct: 81  KVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIASAALLQGLTAYTLIEEAYPVKT 140

Query: 772 GKSLLVHSAGGRCGTKL 822
           G +++VH+A G  G  L
Sbjct: 141 GDTVVVHAAAGGVGLLL 157


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 667 VYALPEGMSALDAVAITTNYVVAYLLLFXMANLTPGKSLLVHSAGGRCGT 816
           V+ LP+G+S  +        + A+ +L     + PG  L++  A G  GT
Sbjct: 131 VWHLPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGTKLVIEGASGGVGT 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,249
Number of Sequences: 5004
Number of extensions: 26609
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)