Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_E02
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    63   2e-10
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    43   3e-04

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 29/66 (43%), Positives = 39/66 (59%)
 Frame = +2

Query: 74  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQ 253
           MK+  C YSGYKI+PGHGK +V+ DGK   FL+ K      +RRNPR        + + +
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60

Query: 254 KGPRGR 271
           KG  G+
Sbjct: 61  KGTHGQ 66



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 219 VTWTVLYRRKFKKG---QEEEQAKKRTRRTHXFQRAIVGASLSDIMAKRN 359
           + WTVLYR K KKG   QE+   KK  +      RA+ G SL  I+AKRN
Sbjct: 49  IRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRN 98


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 74  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR 214
           M+I  C +    IYPGHG   V+ D   F F  S+C      ++NPR
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPR 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,393,073
Number of Sequences: 27780
Number of extensions: 201034
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)