Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP25_F_D24
(976 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.34
02_05_0686 - 30900748-30902167,30903442-30904742 31 0.46
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 31 1.1
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 30 3.2
08_01_0059 - 394001-394708 29 7.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.8
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784... 28 9.8
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 33.1 bits (72), Expect = 0.34
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +1
Query: 379 APPXXERXXXXXPPPXPXXXTGPXGGAXXLSXRRGPXPPXGKGXCXXGPPP 531
APP E PPP GP R G PP G PPP
Sbjct: 1138 APPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPP 1188
Score = 28.7 bits (61), Expect = 7.4
Identities = 19/62 (30%), Positives = 21/62 (33%)
Frame = +1
Query: 352 PMFPSXXXXAPPXXERXXXXXPPPXPXXXTGPXGGAXXLSXRRGPXPPXGKGXCXXGPPP 531
P P+ P PPP P G GG + P PP G GPPP
Sbjct: 1163 PPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPP--TPPGAPAPPMPPG-VPGGPPP 1219
Query: 532 RP 537
P
Sbjct: 1220 PP 1221
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.5 bits (68), Expect = 1.1
Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Frame = +1
Query: 352 PMFPSXXXXAPPXXERXXXXXPPPXPXXXTGPXGGAXXLSXRRG--PXPPXGKGXCXXGP 525
P P+ PP + PPP P G +G P PP G GP
Sbjct: 318 PPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGP 377
Query: 526 PPRP 537
PP P
Sbjct: 378 PPPP 381
Score = 29.9 bits (64), Expect(2) = 0.46
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +3
Query: 522 PPPPXRGXXXXXXXXXXDKXGTPPPXXGGGGXXXXXAPP 638
PPPP +G K G PPP GG A P
Sbjct: 355 PPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAP 393
Score = 21.4 bits (43), Expect(2) = 0.46
Identities = 17/65 (26%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Frame = +3
Query: 270 PRXPTSWGRAS--GPAPQKKGXXKXGPCXAHVPIXXXXXPPXKXKKXXXXPPPPSXXXHX 443
P P S A+ PAP K P PP K PPP
Sbjct: 297 PSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPP 356
Query: 444 PXGGG 458
P G
Sbjct: 357 PPPKG 361
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 31.5 bits (68), Expect = 1.1
Identities = 19/67 (28%), Positives = 22/67 (32%)
Frame = +3
Query: 246 PYAGVXGXPRXPTSWGRASGPAPQKKGXXKXGPCXAHVPIXXXXXPPXKXKKXXXXPPPP 425
P AGV G P WG P P ++ P P PP + PPPP
Sbjct: 8 PQAGVAGGGGAPPQWGAIPPPVPHQQQQYAPPP-----PQMWGQAPPPPPQMWGQAPPPP 62
Query: 426 SXXXHXP 446
P
Sbjct: 63 QPAYGQP 69
Score = 28.3 bits (60), Expect = 9.8
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +2
Query: 338 GALPGPCSHLXXXXPPRKXKEXXXXPPPPXQXXXXAP 448
GA+P P H P + PPPP Q AP
Sbjct: 23 GAIPPPVPHQQQQYAPPPPQMWGQAPPPPPQMWGQAP 59
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = -3
Query: 536 GRGGGPXXXXPFPXGGXGPLRXDXXXAPPXGPVXXXGXGGG 414
G GGG P GG G ++ AP P G GGG
Sbjct: 96 GGGGGSSMQQQQPGGGGGGVQQFGAVAPEMSPFSPAGGGGG 136
>08_01_0059 - 394001-394708
Length = 235
Score = 28.7 bits (61), Expect = 7.4
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 415 PPPXPXXXTGPXGGAXXLSXRRGPXPPXGKGXCXXGPPPRPXA 543
PPP P P RR P PP P PRP A
Sbjct: 2 PPPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYA 44
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Frame = +1
Query: 382 PPXXERXXXXXPPPXPXXXTGPXGGAXXLSXRRG----PXPPXGKGXCXXGPPP 531
PP PPP P P G G P PP KG PPP
Sbjct: 753 PPLMTGKKAPAPPPPPPQAPKPPGTVPPPPPLHGASGRPHPPSSKGLNAPAPPP 806
>03_06_0074 -
31476094-31476215,31477803-31478238,31478438-31478485,
31478569-31479018,31479567-31479681,31480052-31480905
Length = 674
Score = 28.3 bits (60), Expect = 9.8
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +1
Query: 415 PPPXPXXXTGPXGGAXXLSXRRGPXPPXGKGXCXXGPP 528
PPP P P G ++ R PP G+G P
Sbjct: 88 PPPPPHARHAPMTGQTPVAGSRSSRPPRGRGQMEVDSP 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,187,708
Number of Sequences: 37544
Number of extensions: 383516
Number of successful extensions: 745
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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