Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_D23
         (978 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    31   1.6  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    29   5.0  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    29   5.0  

>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 391 YILKLTSRLNNTSIYGVCLKDHFPIALAEPRTSIAGPALTMP 266
           ++L L+  L   S Y + +K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
 Frame = -3

Query: 712 PIXXGGAQXXKXFFXXGXPXPPP-XGXXPPPXP 617
           P   GG       F  G P PPP  G  PPP P
Sbjct: 77  PPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPP 109


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 664 GXPXPPPXGXXPPPXP 617
           G P PPP G  PPP P
Sbjct: 788 GIPPPPPLGIIPPPPP 803


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 664 GXPXPPPXGXXPPPXP 617
           G P PPP G  PPP P
Sbjct: 788 GIPPPPPLGIIPPPPP 803


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,388,537
Number of Sequences: 27780
Number of extensions: 230565
Number of successful extensions: 885
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)