Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_D18
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0903 - 28652447-28653346,28653890-28654056,28654075-286542...    30   2.8  
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329...    29   5.0  
11_02_0011 - 7337618-7338496,7338596-7338991                           28   8.7  
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606...    28   8.7  

>03_05_0903 -
           28652447-28653346,28653890-28654056,28654075-28654264,
           28654916-28655210,28655514-28655760,28656017-28656443
          Length = 741

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 558 DEALQVSILLHAVEPPSGRRAVRECLVNGVPVERF 454
           ++AL+V +  HAV  P G   ++ C V GV + RF
Sbjct: 73  EDALEVFVDGHAVRIPKGFTVLQACEVAGVDIPRF 107


>02_01_0459 +
           3298780-3298788,3298900-3299037,3299174-3299207,
           3299528-3299531,3299814-3299949,3300034-3300090,
           3301689-3301786,3301876-3301947,3302056-3302228,
           3302552-3302698,3303113-3303336,3305300-3305306,
           3305634-3305800,3306033-3306068,3306787-3307004,
           3307115-3307172,3307761-3307842,3308045-3308207,
           3308594-3308598,3308700-3308885,3308969-3309548,
           3309642-3309774,3309880-3309948,3310184-3310395,
           3310654-3310891,3311228-3311386,3311501-3311926,
           3312010-3312447,3312593-3312712,3312784-3313266,
           3313471-3314009,3314178-3314667,3314836-3314904,
           3315735-3315839,3315940-3316158,3316254-3316508,
           3316602-3316651,3317175-3317284,3317372-3317454,
           3317560-3317772,3317870-3318040
          Length = 2391

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 578 PVQPDGSMKPFRFQSYCTPLNLHLEGEPSVNA 483
           P Q DGS  P +   YCTP +  L   P +++
Sbjct: 792 PFQVDGSANPSKVDPYCTPPHETLNSMPKLSS 823


>11_02_0011 - 7337618-7338496,7338596-7338991
          Length = 424

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 365 TRAVLAHSGGHRRDVIRNAIVPTSTEILPKLIKKVCVSA 249
           TRA+L H GG    +     +P   + LP L+ K+  S+
Sbjct: 248 TRAILEHYGGENVGLSMYIFLPDERDGLPALVDKMAASS 286


>03_05_1011 +
           29658144-29658310,29659531-29659676,29660526-29660602,
           29660682-29660804,29661817-29661924,29661995-29662075,
           29662157-29662309,29662469-29662540,29662745-29662863,
           29662958-29663071,29663176-29663221,29664865-29664933,
           29665662-29665808,29666410-29666706
          Length = 572

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 474 HLPGIHGRLAFQME 515
           HLPG HGRL F +E
Sbjct: 41  HLPGFHGRLPFHLE 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,974,130
Number of Sequences: 37544
Number of extensions: 387070
Number of successful extensions: 1021
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)