Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_D18
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical pr...    31   0.84 
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    30   2.6  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    30   2.6  
AC006615-4|AAK68233.2|  602|Caenorhabditis elegans Hypothetical ...    30   2.6  
AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    29   5.9  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    29   5.9  
Z82070-9|CAB04916.4|  222|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL132872-4|CAJ76957.2|  222|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    28   7.8  

>Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical
           protein T13H5.8 protein.
          Length = 566

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +2

Query: 80  RAFLSLLYFHIFVSRLFCVSLNLLIICSVSCCRNIELFLVLFRLNFLYPVNSSRASE 250
           RAF+    F+ F+  LF   + +     ++C R+  +FLV     +LYPV+ +R +E
Sbjct: 468 RAFMYKA-FNTFIDDLFAFVITMPTAHRMACFRDDIVFLVYLYQRWLYPVDYTRINE 523


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
           protein Y39A1B.3 protein.
          Length = 1499

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 534 RLKPEGLHRSVWLHRPQQARRINSKETSVYINRNNGRKIP 653
           RLK EG+ + +  H   +A  + SK  S+  N    R+IP
Sbjct: 423 RLKREGIFKRLLAHTNDEATNVRSKAVSLLRNIMENRRIP 462


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
           compensation protein protein.
          Length = 1455

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 534 RLKPEGLHRSVWLHRPQQARRINSKETSVYINRNNGRKIP 653
           RLK EG+ + +  H   +A  + SK  S+  N    R+IP
Sbjct: 379 RLKREGIFKRLLAHTNDEATNVRSKAVSLLRNIMENRRIP 418


>AC006615-4|AAK68233.2|  602|Caenorhabditis elegans Hypothetical
           protein C36B7.6 protein.
          Length = 602

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/54 (22%), Positives = 29/54 (53%)
 Frame = +2

Query: 89  LSLLYFHIFVSRLFCVSLNLLIICSVSCCRNIELFLVLFRLNFLYPVNSSRASE 250
           L+  + + F+  LF   + + ++  + C R+  +FL+     ++Y V+ +R +E
Sbjct: 514 LTYKFINTFIDDLFAFVIKMPLLYRIGCFRDDIIFLIYLYQRWIYRVDPTRMNE 567


>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 122 RLFCVS-LNLLIICSVSCCRNIELFLVLFRLNFLYPVNSSRASERTHTLF 268
           R FCVS ++L +  S+S   +++LFL  F  + L+P+  S +S   +TLF
Sbjct: 82  RGFCVSPVSLSLSLSLSLSLSLDLFLSSF--SPLFPIEPSSSSSSYNTLF 129


>Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical
           protein W09D12.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 131 CVSLNLLIICSVSCCRNIE-LFLVLFRLNFLYPVNSSRASERTHTL 265
           C++L+ L +      +N+  LFLV++R   +Y +NS +   R + L
Sbjct: 81  CLTLSKLFVSLYFHLQNVTGLFLVIYRFTSVYSINSEKVWNRWYFL 126


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 467 LLKDLNIPKIISPFGVD---AVILTGDTQLRGVRPKPTRAVLAH 345
           + ++L  P+I++PF VD    ++  GDTQ  G +    R  L +
Sbjct: 378 IAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLRY 421


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 467 LLKDLNIPKIISPFGVD---AVILTGDTQLRGVRPKPTRAVLAH 345
           + ++L  P+I++PF VD    ++  GDTQ  G +    R  L +
Sbjct: 378 IAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKENGARVDLRY 421


>Z82070-9|CAB04916.4|  222|Caenorhabditis elegans Hypothetical
           protein W04E12.7 protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 476 FTRHSRTARLPDGGSTACSKIET*RASSIR 565
           +T+  +  ++P+GG   CS+ ET   S+++
Sbjct: 113 YTQQDKDGKVPEGGKVKCSETETGARSNVK 142


>Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical
           protein R166.2 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/54 (20%), Positives = 28/54 (51%)
 Frame = +2

Query: 89  LSLLYFHIFVSRLFCVSLNLLIICSVSCCRNIELFLVLFRLNFLYPVNSSRASE 250
           L+  + + F+  LF   + + ++  + C R+  +FL+     + Y ++ +R +E
Sbjct: 519 LTYKFINTFIDDLFAFVIRMPLLYRIGCFRDDIIFLIYLYQRWAYRIDPTRLNE 572


>AL132872-4|CAJ76957.2|  222|Caenorhabditis elegans Hypothetical
           protein W04E12.7 protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 476 FTRHSRTARLPDGGSTACSKIET*RASSIR 565
           +T+  +  ++P+GG   CS+ ET   S+++
Sbjct: 113 YTQQDKDGKVPEGGKVKCSETETGARSNVK 142


>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 644 PSIISIYVDTSLFTVNSPGLLRPVQP-DGSMKPFRFQSYCTPLNLHLEGEPSVNAW*MGC 468
           PS+ S  + +SL +  SP   RP+ P  G   P +++ + +  ++HL   P + A+   C
Sbjct: 266 PSVCSYRLPSSLGSAPSPSPPRPLSPVFGQPAPPQYRMHVSQ-SMHLPRRPDIEAFLADC 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,938,369
Number of Sequences: 27780
Number of extensions: 334986
Number of successful extensions: 967
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)