Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP25_F_D18
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    28   0.13 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    27   0.23 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.40 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   1.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   4.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.6  

>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 222 YKKLRRNNTRNSSILRQHDTLQIINKLSETQNKRLTNI*KYNNERN 85
           Y+K R  +   S   R+ +  +    +S   N  ++NI  YNN+ N
Sbjct: 56  YRKYRERSKERSRDKRERERSKERKIISSLSNNYISNISNYNNDNN 101


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 222 YKKLRRNNTRNSSILRQHDTLQIINKLSETQNKRLTNI*KYNNERN 85
           Y+K R  +   S   R+ +  +    +S   N  ++NI  YNN  N
Sbjct: 56  YRKYRERSKERSRDKRERERSKERKIISSLSNNYISNISNYNNNNN 101


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 614 SLFTVNSPGLLRPVQPDGSMKP 549
           SL T  S G+L PV P G +KP
Sbjct: 309 SLSTSGSSGILTPVSPYGYVKP 330


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -1

Query: 222 YKKLRRNNTRNSSILRQHDTLQIINKLSETQNKRLTNI*KYNNERN 85
           Y+K R  +   S    + +  +    +S   N  ++NI  YNN  N
Sbjct: 294 YRKYRETSKERSRDKTERERSKERKIISSLSNNYISNISNYNNNNN 339


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 558 DEALQVSILLHAVEPPSGRRAVRECLVNGVPVERFEHP 445
           D   ++ + +  ++P S  +A  + L     + +FEHP
Sbjct: 657 DGRTEIDVAIKTLKPGSADKARNDFLTEASIMGQFEHP 694


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 234 EFTGYKKLRRNNTRNSSILRQHDTLQIINKLSETQNKRLTNI*KYNNERNAR 79
           E+  Y K  +  +R+     +    +II+ LS   NK + N   YNN  N +
Sbjct: 277 EYRKYGKTSKERSRDRMERERSKEPKIISSLS---NKTIHNNNNYNNYNNKK 325


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 302 PTSTEILPKLIKKVCVSAPTHDW 234
           P   +I  +L+ +V +S PT+DW
Sbjct: 242 PDYFDIPNELVLEVPLSHPTYDW 264


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 294 NRNTPEINKKSVCVR 250
           +R  PEI+K  +CVR
Sbjct: 478 SRCPPEIHKSCICVR 492


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 294 NRNTPEINKKSVCVR 250
           +R  PEI+K  +CVR
Sbjct: 478 SRCPPEIHKSCICVR 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,106
Number of Sequences: 438
Number of extensions: 4286
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)